Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01577 ATGTCTGACGTGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAGAAGTTCGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACAGGGAGCGTGGTCGTGATCGTGGTCGTGATCGAGATTATGGAGGTGGAGGTGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAGTGCCCTGGTGAAGGGTCCAAGGGAGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGCAGGACCATATGAGCGAGAGCGACGGGGATCGGGAGGCTTTCGTTGA 639 0.482 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRGRDRDYGGGGGGGGGRGSNGGECFKCGKPGHFARECPGEGSKGGRYGGRESRYGGSSGGGYGPDRNADRSSGGRSRDGGSHGDSGNDRYYRDRAGPYERERRGSGGFR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01577 212 MobiDBLite consensus disorder prediction 76 212 - -
Pumo6g01577 212 ProSiteProfiles Zinc finger CCHC-type profile. 127 141 IPR001878 GO:0003676|GO:0008270
Pumo6g01577 212 CDD RRM2_NsCP33_like 8 83 - -
Pumo6g01577 212 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Pumo6g01577 212 SUPERFAMILY Retrovirus zinc finger-like domains 110 145 IPR036875 GO:0003676|GO:0008270
Pumo6g01577 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pumo6g01577 212 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Pumo6g01577 212 Gene3D - 2 121 IPR012677 -
Pumo6g01577 212 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 206 - -
Pumo6g01577 212 Pfam Zinc knuckle 126 141 IPR001878 GO:0003676|GO:0008270
Pumo6g01577 212 Gene3D - 122 180 - -
Pumo6g01577 212 MobiDBLite consensus disorder prediction 173 212 - -
Pumo6g01577 212 MobiDBLite consensus disorder prediction 88 110 - -
Pumo6g01577 212 FunFam Glycine-rich RNA-binding protein RZ1A 1 122 - -
Pumo6g01577 212 FunFam Glycine-rich RNA-binding protein 10 123 180 - -
Pumo6g01577 212 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pumo6g01577 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01577 Pumo-Chr6 22954179 22957463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01577 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 2.98e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01577 - - gmx:100815224 302.753