Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01571 ATGGCAGGAAGTGTTCATGTTTTAGCTCCTGATTCTAGCATTAATGGAACAATGAAACCTTTGCCTGAGGATTTCAATTCCACGGCGATTATACGATATCATGTGCCACTCACAATTGGAGAGAATGACATTTGCAAAGGAGAGCCTCAGAATAATAGTACAGAAAATGGGGAAAGAAAGATAGTACTTGGAAGAAATATTCATACCATGTGCCTTGAAGTCACGGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAAGTGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGGATTTTGACTATGATGCACTCTCTCAACTTCAGCATTTTTCCATCAACAACCTGGGGGATCCCTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTCGCGCGGTTGTGGGAGCTGGAGAAAGATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTTCATGGCATCCTAGTGGGGAGAGAGGTGTTCCCAGATGGGATATTATATGCCTCACAGGAGTCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACAGAATGGAATGTGTGAAGATTGACACTCTTTGGTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTATGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGACCTTGATCTGGTTATAAAGAAACTTGAAGAAGCAGGATTTTCACATGACAGGTTCTACATCCATTGTGATGGGGCCTTGTTTGGTCTCATGTTGCCTTTTGTCAAGCGTGCTCCAAAAGTTTCTTTCAAGAAGCCTATCGGCAGCGTGAGTGTTTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGGGTGCAGATAACACGGTTGGAACACGTCAAGGCCCTTTCCAGAAACGTGGAGTATCTTGCTTCAAGGGACGCCACAATCATGGGAAGCAGAAACGGCCACGCCCCCATATTCCTCTGGTACAATCTCAACATGAAAGGGTACAGAGGGTTTCAGAAAGAGGTGCAGAGGTGCTTGAGGAATGCACACTACTTCAAGGGTCGCCTTGTGGATGCTGGCATTGGAGCAATGCTCAATGAGCTTAGCAGCACCTGTTGTGTTTGA 1239 0.4463 MAGSVHVLAPDSSINGTMKPLPEDFNSTAIIRYHVPLTIGENDICKGEPQNNSTENGERKIVLGRNIHTMCLEVTEPDIDDEVTGEREAYMASVLAKYKKSLTERTNYHLGYPYNLDFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKIDTLWSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVKALSRNVEYLASRDATIMGSRNGHAPIFLWYNLNMKGYRGFQKEVQRCLRNAHYFKGRLVDAGIGAMLNELSSTCCV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01571 412 SUPERFAMILY PLP-dependent transferases 99 404 IPR015424 -
Pumo6g01571 412 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 310 331 IPR021115 GO:0016831
Pumo6g01571 412 Gene3D - 125 395 IPR015421 GO:0003824
Pumo6g01571 412 PANTHER - 51 409 - -
Pumo6g01571 412 Pfam Pyridoxal-dependent decarboxylase conserved domain 196 396 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pumo6g01571 412 FunFam Serine decarboxylase 1 125 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01571 Pumo-Chr6 22894310 22903059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01571 209 391 Calmodulin-binding Proteins AT1G65960 26.042 3.65e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01571 K25193 - gmx:100792053 777.319