Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01562 ATGGCGTCGTCGAAGGTTGTCTCGACGAATCCGGATCTGCCACGCGACTCTTCTTCTTCGTCATCGTCTTCTTCGTCTATATCTCCCCTTTCCTCTCTTCTCTCCGATCTGCACCCCATGGACGACCTCCTCAAGTCCATAACCCCCAAGACCGTCGACGACGTCTGGAAGGAGATCGTCGCCGGCGCCGCCCACGACGCCGACAATGCCGACGCCGGAGAGGGTCCCGCCATGACCCTCGAGGATTTCCTCACCAAGGCCGGTGCCGTCAGAGAGGAAGACGTCAGAGGGGTTCTTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCCTCTCTCCCTTTTCCTCTTCCTCTCCCTGCGGAGGGTTCTTCTTCCTCCGTTGAGCCCTTTGGGAATGGCGTTCCCTCGAATTCGGTTCAGAAAGGGAAGAGGAGGGCCGTTGAGGAACCGGTTGATAAGGCCACGCTTCAGAAGCAGAGGAGGATGATCAAGAATAGAGAGTCTGCTGCTAGGTCCAGGGAACGCAAGCAGGCTTACACATCTGAGCTTGAGTATCTGGTTCACCAGCTAGAGCAAGAGAATGCACGGTTATTAAACGAAGAGGCTGAGATGAGAAGGCAGAGGAAAAAGCAGCTCTTTGAGTGCATCATTCCAATTGAGGTGATGCCTAAACCGAAGAAAAAACTTCGGAGAGTAAATTCAGCACAATCATTGTGA 714 0.542 MASSKVVSTNPDLPRDSSSSSSSSSSISPLSSLLSDLHPMDDLLKSITPKTVDDVWKEIVAGAAHDADNADAGEGPAMTLEDFLTKAGAVREEDVRGVLPPPPPPPPSSSLPFPLPLPAEGSSSSVEPFGNGVPSNSVQKGKRRAVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLLNEEAEMRRQRKKQLFECIIPIEVMPKPKKKLRRVNSAQSL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01562 237 Pfam bZIP transcription factor 153 208 IPR004827 GO:0003700|GO:0006355
Pumo6g01562 237 SUPERFAMILY Leucine zipper domain 156 207 IPR046347 GO:0003700|GO:0006355
Pumo6g01562 237 MobiDBLite consensus disorder prediction 1 34 - -
Pumo6g01562 237 MobiDBLite consensus disorder prediction 91 152 - -
Pumo6g01562 237 Gene3D - 155 210 - -
Pumo6g01562 237 Coils Coil 179 209 - -
Pumo6g01562 237 MobiDBLite consensus disorder prediction 124 138 - -
Pumo6g01562 237 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 206 IPR004827 GO:0003700|GO:0006355
Pumo6g01562 237 MobiDBLite consensus disorder prediction 1 33 - -
Pumo6g01562 237 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 159 174 IPR004827 GO:0003700|GO:0006355
Pumo6g01562 237 SMART brlzneu 152 216 IPR004827 GO:0003700|GO:0006355
Pumo6g01562 237 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 155 211 - -
Pumo6g01562 237 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 21 232 IPR043452 GO:0003700|GO:0045893
Pumo6g01562 237 MobiDBLite consensus disorder prediction 97 114 - -
Pumo6g01562 237 CDD bZIP_plant_BZIP46 156 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01562 Pumo-Chr6 22478600 22482095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01562 50 224 bZIP Transcription Factor Family AT1G03970 46.111 3.26e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo6g01562 bZIP_1 1.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01562 K14432 - gmx:100101890 317.39