Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01553 ATGGGTAGAAGCCGAGAAAAACCCTCAAAGATGGAAATTGATCTCTCTTTGAAGATAGATACTGATGATGAGCAAAAAGAAGAAGAAGTTGATGAGCGAGTGAAAGAGGATGAGGAGGAAGAAATGGCACAAATTCCGGATAATAATAAGGAAGAAGTCCCTGAAGCCACAGCTGGTGAAATAGAAGATGATGCATCAGTGGTAGAAACATCTTTGCAAGATAACACAAAAACAAAAAAGTTAAGTGTCTTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTCGTAGAACAAACAATGAAAGACTATTATGATCTGCAAATGAAATTCTCAGCCATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCACTTCAAGACATTGCGACCACCAGCGGTGAAGGGCCATCGAGAATTCTTGAGATCTTTAACAAAAAAAATATTCAAAGTGCTCCATCTCCTCCACATACTGATGATGATAATTTAAGCGAGAGTGAATTGGGTTTATCTCTAAGGTTGCAACCAAGCACAAGCCATAAAGAAAGTGATGTGGGAAATAATAATAAGGAAGACAAAAATGATCAACAATTGGCAAGTTTTGCATCAGTGCAGAACAAATTACAGCGGACACATGAGTTGCCCGGTATCACTACCCATGCTGCTTCCCCTCCTAATAGAAAGGCTAGGGTTTCAGTTAGAGCAAGATGTGAAGCTGCCACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCTCCAGGCTGCCCTGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGGACACATAACCATCCACTCCCTGTGGGTGCAACTGCTATGGCTTCCACAGCTTCTGCAACAGCTTCCTTCATGTTGCTGGACTCAAGCAACCCCATTTCAGATGGCACCTCTACTTTCACCCATGCACCCCTTCCTTACAGCACCTTCCACCCATTCAACCCAGCTTCTTCAAATTTTAGGAGCATAAGCCCCAGTGATCCATCCAAAGGGATTGTTCTTGATCTCACTAGCAACCTCACTGAACCACCACTACGTTTTTCCACTGGTAGCTCCTCTAGTACCATAACTGATCCTCGTTTTTCTTGGATGCAAAACAAATACCAAGGTGGTGGTGCCATTGCATTGAACAATTTTCACAAGCCTAGGCCATTGGATAATATTCATGATAGAATTTGGAAAGGAGAAGAAAGCAATAATAATAAGCCACTAGATGACAATGTGAACGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCTGCGGCCATAACATCTCTCATGAATAAAGAGAGCCACGCTACTCACCCTATAGGGACTTCCTTTGGTTCTAGGAGTGGCCAAAATGGTGGTAGCTAG 1491 0.4212 MGRSREKPSKMEIDLSLKIDTDDEQKEEEVDERVKEDEEEEMAQIPDNNKEEVPEATAGEIEDDASVVETSLQDNTKTKKLSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGPSRILEIFNKKNIQSAPSPPHTDDDNLSESELGLSLRLQPSTSHKESDVGNNNKEDKNDQQLASFASVQNKLQRTHELPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASATASFMLLDSSNPISDGTSTFTHAPLPYSTFHPFNPASSNFRSISPSDPSKGIVLDLTSNLTEPPLRFSTGSSSSTITDPRFSWMQNKYQGGGAIALNNFHKPRPLDNIHDRIWKGEESNNNKPLDDNVNAIASDPKFRVAVAAAITSLMNKESHATHPIGTSFGSRSGQNGGS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01553 496 MobiDBLite consensus disorder prediction 475 496 - -
Pumo6g01553 496 FunFam probable WRKY transcription factor 31 235 312 - -
Pumo6g01553 496 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01553 496 Pfam WRKY DNA -binding domain 251 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01553 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 475 IPR044810 GO:0003700
Pumo6g01553 496 MobiDBLite consensus disorder prediction 182 202 - -
Pumo6g01553 496 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01553 496 MobiDBLite consensus disorder prediction 1 63 - -
Pumo6g01553 496 SUPERFAMILY WRKY DNA-binding domain 243 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01553 496 Gene3D WRKY domain 235 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01553 496 MobiDBLite consensus disorder prediction 24 45 - -
Pumo6g01553 496 MobiDBLite consensus disorder prediction 1 23 - -
Pumo6g01553 496 Coils Coil 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01553 Pumo-Chr6 22370264 22373150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01553 11 374 WRKY Transcription Factor Family AT1G68150 46.257 6.00e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g01553 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01553 - - gmx:100820209 840.491