LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g01552	ATGGACTGGAGGTGGAGGACCAAGAAGCACCACCACACTCCGCCGCCGCAGCAACCTCGCCTGGAGCGCCTCAACGCTAAGAAAGGCATCAATTACCAACCACCATCACCCTCTCCTCCTTCACCTTCTTCTTCTGCTGCTTCCTCTCACTTGGACCACCAAACCAGCTTCCGCCTCTTCGGCATCGACGGCGAATTCGACCGCATCTTCCAGACCATGGGCCTCTCCGGCCCAGAAGACTTCTCCATCCCCACCGCTGACTGGGAGGCCCGCAAGGCCCGCGTCGCATCCTCCAACTCCACCGGGCCCACCACTGCTTCTCACGCGCTTCCCACTTCCGAGATCAACCATGTAACAACAACTAATGTTACTGCCGCGTCTTCCCTTCAAGACGACGCCGTTTCGGTTCTTGCTGTGGTTTCTTCTTCCTCCCCTTGGTCTTCCGGGGAGCACGACGTGGGTAGGGGCAGTGTCGGTAGACTCAGGCACGGCGAAAGGAGCGTGCTTTTCACCGATTCCGGTTCCTTCACCACTTCACACGACGACGACAGTGATATTGGCGGCGAAAGGCCGTGTTTGGCTTCTAATTCCGCTGCCGCTGATGAGTTGGTTATTCCCTATAGATCCTCCAATGAGTGGTTCAGACAGACCTTCGCTTCGTGGCAGAAAGGTGACGTCTTGGGAAATGGGTCCTTCGGAACGGTCTATGAAGGCTTCACCGATGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGTTGGATGAAGGTGGCCAGGGAAAGCAGAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTTGAGCATAAAAACATAGTTCGATATTATGGCTCTGACAAGGACAAAAGTAAACTATATATCTTCCTTGAACTTATGTCAAAAGGGTCATTAGCAAGTCTCTATCAAAAGTATCGTTTAAACGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAGTGGCTTGAAGTATCTTCATGATCATAATGTGGTCCACAGGGACATCAAATGTGCTAATATACTGGTCGATGTAAGTGGGCAAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGCTCTCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAAAAACCAAGGTGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCACTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCTGAATATTTATCCAACGATGCCCGAGATTTCATTCTTGAATGCTTACAAGTTAACCCAAACGAACGTCCAACTGCAGCTCAACTATTTGATCATCCATTTCTAAGGAGAACAATTCTATCTCCCTTAAGTTTTGCTTCTCCTCATAGGAGTATCTATCGGTTATAA	1488	0.4832	MDWRWRTKKHHHTPPPQQPRLERLNAKKGINYQPPSPSPPSPSSSAASSHLDHQTSFRLFGIDGEFDRIFQTMGLSGPEDFSIPTADWEARKARVASSNSTGPTTASHALPTSEINHVTTTNVTAASSLQDDAVSVLAVVSSSSPWSSGEHDVGRGSVGRLRHGERSVLFTDSGSFTTSHDDDSDIGGERPCLASNSAAADELVIPYRSSNEWFRQTFASWQKGDVLGNGSFGTVYEGFTDDGFFFAVKEVSLLDEGGQGKQSIFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILSGLKYLHDHNVVHRDIKCANILVDVSGQVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGEPPPIPEYLSNDARDFILECLQVNPNERPTAAQLFDHPFLRRTILSPLSFASPHRSIYRL	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g01552	495	ProSitePatterns	Protein kinases ATP-binding region signature.	227	249	IPR017441	GO:0005524
	Pumo6g01552	495	Pfam	Protein kinase domain	222	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01552	495	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	340	352	IPR008271	GO:0004672\|GO:0006468
	Pumo6g01552	495	FunFam	Mitogen-activated protein kinase 1, putative, expressed	219	488	-	-
	Pumo6g01552	495	SMART	serkin_6	221	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01552	495	PRINTS	Tyrosine kinase catalytic domain signature	401	423	IPR001245	GO:0004672\|GO:0006468
	Pumo6g01552	495	PRINTS	Tyrosine kinase catalytic domain signature	444	466	IPR001245	GO:0004672\|GO:0006468
	Pumo6g01552	495	PRINTS	Tyrosine kinase catalytic domain signature	299	312	IPR001245	GO:0004672\|GO:0006468
	Pumo6g01552	495	PRINTS	Tyrosine kinase catalytic domain signature	334	352	IPR001245	GO:0004672\|GO:0006468
	Pumo6g01552	495	SUPERFAMILY	Protein kinase-like (PK-like)	220	486	IPR011009	-
	Pumo6g01552	495	ProSiteProfiles	Protein kinase domain profile.	221	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01552	495	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	41	477	-	-
	Pumo6g01552	495	MobiDBLite	consensus disorder prediction	1	52	-	-
	Pumo6g01552	495	Gene3D	Transferase(Phosphotransferase) domain 1	219	490	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g01552	Pumo-Chr6	22354076	22359005	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g01552	20	97	MAP Kinase Kinase Kinase	AT4G08500	39.535	5.51e-08	53.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pumo6g01552		Pkinase	1.9e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g01552	-		K13414	gmx:100820552	797.734