Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01548 ATGTGCAATATCCTTGGCACAATTATGGATAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTAATAATCCCTTCTCTCATCGTGATCACTGGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAAGGGTTTAATGGCAACTTCGGTGATCCATTCTCAAACATGAGAGATCCATTTCTACATGAGCTTGATTTGCCTCGCTCTGCCAGCTGCTACTTTAACAGCACAACAAGTTCTGCAGAAATTAGCGGTTCTGGGGCATTGGAAGAAGCAACTTGTTTGGTGGTGGGGTTGCTGGCAGTAGCAATAATCTCTCCCAATGATAAGTTACCCATGTCACCAGTGGTGGATGCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTCATGTAACAACATGATTAATGTGAAGACCTCTGAAGATCATTGCTTGGTGGGCAACACAGAATTGCAGATCTCATCTCCACGGAATCAAGGTCTTAAGAGAAGAAAGAGCCAGGCAAAGAAGTCTATTTGTGTTCCTGCACCAGCTGCACCAAACAGCAGACAAAGTGGCGAGGCAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGAGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTCATTACATACACTTCTGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCAACCAGATCCCAACCATCAAAAAACAACAACATTGATGCTTCAAAGAATTCAGAAACCACTCCCCAAAATGAGGAAGAAGAGGAGGAGGAGGAGAGCAATAGTGACAGTAATAATGTAAATAACAGTGGTGCTGCATTTGTGAGGGAAGAAGAGAAGAAGCTTGAAATGGATGATGGAGAATTCAGTGATATTAGACTCCCTTACAAGCCAATATCTAATAAGATGAAGAACTACCAACAACTTGATCAGGGTTTGTTTGCAGAATTGGGAGAAATAGAAAAGGATCACTCACTAAACCTATTGTCTCCACCACAACAAGGTTTTGATGATCAGCAAAGGGAAACCAACGCTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGATAACAGCACCAAGTACCACCTTGTTTGA 1260 0.4325 MCNILGTIMDNYQGDLSDIIRASGASYGSCSTGTSSSEAANNPFSHRDHWQFSSDPMIFSSVLEGFNGNFGDPFSNMRDPFLHELDLPRSASCYFNSTTSSAEISGSGALEEATCLVVGLLAVAIISPNDKLPMSPVVDALSRALKPSGVVSCNNMINVKTSEDHCLVGNTELQISSPRNQGLKRRKSQAKKSICVPAPAAPNSRQSGEAVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSTRSQPSKNNNIDASKNSETTPQNEEEEEEEESNSDSNNVNNSGAAFVREEEKKLEMDDGEFSDIRLPYKPISNKMKNYQQLDQGLFAELGEIEKDHSLNLLSPPQQGFDDQQRETNALDSFHFFDWRGDNSTKYHLV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01548 419 Pfam WRKY DNA -binding domain 214 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01548 419 MobiDBLite consensus disorder prediction 238 257 - -
Pumo6g01548 419 Gene3D WRKY domain 201 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01548 419 MobiDBLite consensus disorder prediction 265 324 - -
Pumo6g01548 419 SUPERFAMILY WRKY DNA-binding domain 210 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01548 419 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01548 419 SMART WRKY_cls 212 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01548 419 FunFam probable WRKY transcription factor 14 186 266 - -
Pumo6g01548 419 MobiDBLite consensus disorder prediction 265 300 - -
Pumo6g01548 419 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 382 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01548 Pumo-Chr6 22294943 22298389 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01548 1 412 WRKY Transcription Factor Family AT1G30650 42.377 1.13e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g01548 WRKY 9.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01548 - - gmx:102669548 618.616