Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01544 ATGTGCAATATCCTTGGCACAATTATGGATAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTAATAATCCCTTCTCTCATCGTGATCACTGGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTCGGAAGGGTTTAATGGCAACTTCGGTGATCCATTCTCAAACATGAGAGATCCATTTCTACATGAGCTTGATTTGCCTCGCTCTGCCAGCTGCTACTTTAACAGCACAACAAGTTCTGCAGAAATTAGCGGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGCTGGCAGTAGCAATAGTTGTGTTTTGGCACAGAAGATTCTTGACGATGATGATATGAGAAGGCCATGTAATAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATGTCACCAGTGGTGGATGCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTCATGTAACAACATGATTAATGTGAAGACCTCTGAAGATCATTGCTTGGTGGGCAACACAGAATTGCAGATCTCATCTCCACGGAATCAAGGTCTTAAGAGAAGAAAGAGCCAGGCAAAGAAGTCTATTTGTGTTCCTGCACCAGCTGCACCAAACAGCAGACAAAGTGGCGAGGCAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGAGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTCATTACATACACTTCTGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCAACCAGATCCCAACCATCAAAAAACAACAACATTGATGCTTCAAAGAATTCAGAAACCACTCCCCAAAATGAGGAAGAAGAGGAGGAGGAGGAGAGCAATAGTGACAGTAATAATGTAAATAACAGTGGTGCTGCATTTGTGAGGGAAGAAGAGAAGAAGCTTGAAATGGATGATGGAGAATTCAGTGATATTAGACTCCCTTACAAGCCAATATCTAATAAGATGAAGAACTACCAACAACTTGATCAGGGTTTGTTTGCAGAATTGGGAGAAATAGAAAAGGATCACTCACTAAACCTATTGTCTCCACCACAACAAGGTTTTGATGATCAGCAAAGGGAAACCAACGCTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGATAACAGCACCAAGTACCACCTTGTTTGA 1341 0.4295 MCNILGTIMDNYQGDLSDIIRASGASYGSCSTGTSSSEAANNPFSHRDHWQFSSDPMIFSSVSEGFNGNFGDPFSNMRDPFLHELDLPRSASCYFNSTTSSAEISGSGALEEATCFGGGVAGSSNSCVLAQKILDDDDMRRPCNSILSNMIQISPNDKLPMSPVVDALSRALKPSGVVSCNNMINVKTSEDHCLVGNTELQISSPRNQGLKRRKSQAKKSICVPAPAAPNSRQSGEAVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSTRSQPSKNNNIDASKNSETTPQNEEEEEEEESNSDSNNVNNSGAAFVREEEKKLEMDDGEFSDIRLPYKPISNKMKNYQQLDQGLFAELGEIEKDHSLNLLSPPQQGFDDQQRETNALDSFHFFDWRGDNSTKYHLV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01544 446 Gene3D WRKY domain 228 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01544 446 FunFam probable WRKY transcription factor 14 213 293 - -
Pumo6g01544 446 SUPERFAMILY WRKY DNA-binding domain 237 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01544 446 Pfam WRKY DNA -binding domain 241 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01544 446 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01544 446 MobiDBLite consensus disorder prediction 292 327 - -
Pumo6g01544 446 MobiDBLite consensus disorder prediction 265 284 - -
Pumo6g01544 446 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 409 IPR044810 GO:0003700
Pumo6g01544 446 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01544 446 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01544 Pumo-Chr6 22143885 22147516 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01544 1 424 WRKY Transcription Factor Family AT2G34830 41.150 2.62e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g01544 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01544 - - gmx:102669548 694.501