Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01535 ATGGTGAAAATTTCAGTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAACCCAAAAGCGACGCAGGGAAGATGATGATGATGAGGAAGAAGAGCAACAACCGCAACGAAGCTTTGAAATCGTGGAACCTTCAATTGGAACTCAAGAGCACGAAGATCACGCTGCTCCACCCCATGATGGATCGAATGCTAATGCAAATGGGTCTGCAACCAGTAGCAGGGATAGGTCCATTCCTATCTTCGTTTCCGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGTGTGCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCGATGTGTTTAATGCCCATTGGGTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGACTGTATTAAAATGTCTTGCCCGAATGCAAATTATGGCTGCAAAGAGACATTTAGTTACAGCAGGAAAAGCGACCATGAGAAGGAATGCATCTATCTACCATGTTCATGCCCACTTGCAGGTTGTGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACTTTAGCCATAGACATGTAGGCTCTGGAACACAGTTTACATATGATAAATTTTTCACTGTCATCTTAAGTACTAACCAGAGAACAATTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTATTGTTCACAATAACCTTGAGCATCTGGGGAATATAGTCCGCATTAGCTGCATTGGCCCCAAGTCCATGGCAGAGTTTCAGTATGAAGTTTTGGCTAGGTATCAAGGAAAAACTCTAATATTACAATCTTTTACCAAGATCATTCAAGGCCAATATGCTGATGCTCCATCAACTACGTTCCTTTTGATTCCGTCTGGTTTCTTCGCCTCTGAACGACTGAAACTGGATATTCGCATAAAGTCACAACATTAA 960 0.4323 MVKISVGGYDDGEGPSNRTQKRRREDDDDEEEEQQPQRSFEIVEPSIGTQEHEDHAAPPHDGSNANANGSATSSRDRSIPIFVSDPDVLDCCICYEPLCAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDCIKMSCPNANYGCKETFSYSRKSDHEKECIYLPCSCPLAGCDFVASSKELFLHFSHRHVGSGTQFTYDKFFTVILSTNQRTIVLQEKNDANLFIVHNNLEHLGNIVRISCIGPKSMAEFQYEVLARYQGKTLILQSFTKIIQGQYADAPSTTFLLIPSGFFASERLKLDIRIKSQH 319
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01535 319 CDD RING-HC_SIAHs 89 126 - -
Pumo6g01535 319 MobiDBLite consensus disorder prediction 63 77 - -
Pumo6g01535 319 ProSiteProfiles Zinc finger SIAH-type profile. 144 202 IPR013010 GO:0008270
Pumo6g01535 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 35 317 IPR044286 -
Pumo6g01535 319 MobiDBLite consensus disorder prediction 1 77 - -
Pumo6g01535 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 197 IPR013083 -
Pumo6g01535 319 SUPERFAMILY TRAF domain-like 146 315 - -
Pumo6g01535 319 ProSiteProfiles Zinc finger RING-type profile. 91 126 IPR001841 -
Pumo6g01535 319 Pfam Seven in absentia protein family 134 292 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo6g01535 Pumo-Chr6 21998783 22000936 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01535 63 318 C3H Transcription Factor Family AT2G41980 27.636 6.66e-22 92.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01535 K04506 - gmx:100778869 569.311