Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01520 ATGGAGAAGCTACTTTGCTTTAGCTTCAGGGTTTTCACATTTTCATTGCACTGCTTCATGGCCTTAACATTAGCCCTTAGTGGAACCAACTTCACCACAGATAAGCTTGCACTTCTTGCTCTCAAATCTTCAATCACTAAAGATCCTTACTATTTCCTCACTCACAATTGGTCTGCCACCACTTCTTTATGCAACTGGGTGGGTGTCACTTGTGATGCTTACCATGGAAGAGTGAGGACCTTGAATCTCGGTGACATGGCTCTTAGTGGCACCATACCCTCTCACTTGGGAAACCTCACCTTCCTTAATAAACTTGACCTTGGTGGAAACAAATTCCATGGTCAGTTGCCAGAGGAACTAGTCCACCTGCGTAGGTTGAAGTTTCTCAACTTGAGCTACAATGAATTTGGTGGAAATGTTCCAGCATGGATTGGAGGCTTATCTGAACTCAGATACTTATACCTTGGAAATAATAACTTTGGTGGTTTTATTCCAAAATCTATCTTCAATCTGACAAGGCTAGAGATCCTGGCTTGGAGCCACAATCTCATTCAAGGAACCATTCCACCTGAAGTTGGTAAAATGACCCAATTGAGGGCCTTATCAATGAGTTCAAACCGTCTTTCGGGGACAATTCCTCGCACTATCTCTAACCTCTCTTCCCTCGAAAAAATCAGTGTATCTTATAACTCTCTGTCAGGAGGCATTCCAAGTGAGATCGGTGAACTTCCACAATTAGGAATTCTGTATCTCGGAGATAATCCACTTGGTGGCTCCATACCATCAACAATCTTCAATAACTCAATGCTGCAAGACATTGAATTTGGCTCCAGCAATCTATCTGGAAGTCTTCCATCAAACTTGTGCCAAGGACTTCCAAATATCCAAATACTTTATCTAGGTTTCAACCAGTTCTCTGGTAAATTGCCATCTGTTTGGAATCAGTGCAAAGTGTTGACAGATGTAGACTTGTCTCAAAATAGGTTCAGCAGAGGAACCATACCAGATGACATTGGAAACTTACCTATGTTAAACTCCATTTATCTTGATGAGGACAACTTGGAAGGAGAAATCCCATTCTCTCTTTTTAACATATCTTCCATGAGAGTACTCAGTCTGGAACAAAACAAGTTGAACGGTAGCCTAACAGAAGAGATGTTTCATCAGCTTCCATTCCTTCAAATATTGTCTTTGGATAATAATCAATTCGTGGGAAGCATTCCAAGATCTATTGGCAATTGTACGATGCTTGAAGAATTATACTTGGGTAGCAACTCTTTCACAGGCTCTATACCCGAGGAGATTGGTGATCTTCCTATGCTTGCGAATATAAGTTTGGGAAGTAACCATTTAAATGGATCTATTCCCTCAAATATCTTTAACATGTCATCATTAACTTACTTGTATTTGGGAATTAATTCCCTCTCAGGATTTCTTCCATTACACATGGGCATAGAAAACTTAGAAGAACTATACTTGAACGAAAACCAACTTGGTGGAAATATTCTAAGTAGCTTATCCAATGCTTCTAAGCTTAACTATGTGGATTTGAAGTTTAATAAGTTCAATGGAATCATTCCCGGTTCTCTTGGGAATTTGAGATACCTTCAGCGGTTGGATGTGGCATTCAATAATTTAACTACTGATGCTTCCACTATTGAATTAAGCTTCCTTAGTTCTTTGAATTATCTTCAAATAACAGGGAATCCAATGCATGGAAGCCTTCCCAAGTCAATTGGAAACATGTCCAATTTGGAACAGTTCATGGCAGATCAGTGCAAAATTGATGGCAAAATTCCATTGGAAATTGGAAATTTAAGCAACTTGTTCGCACTAAGTTTGTACCACAATGATTTGAGTGGAACAATTCCAACTACAATAAGTAATTTGCAGTCTCTTCAATATCTGAGACTTGGAAACAACCAACTACAAGGAACCATCATTGATGAACTTTGTGCAATCAACCGGCTTAGTGAGTTGGTCATAACTGAAAATAAGCAAATTTCTGGAATGATCCCAACATGCTTTGGCAATCTTACTTCTCTAAGAAAGCTCTATTTGAACTCAAATAGACTGAATAAAGTGCCCTCTTCTCTTTGGAGTCTCAGAGACATTTTGGAACTAAACTTATCTGACAATGCTTTAACTGGATTTCTTCCGCTTGATGTTGGGAATTTAAAGGCTGCTATATTTTTGGATCTATCATGGAATCAGATTTCAGGAAGCATTCCAAGGGCCATGACAGGATTGCAAAATTTGCAAATTCTCAACTTAGCACATAATAAATTGGAGGGGGACATTCCTGATTCATTTGGTAGTTTGATAAGTTTGACATACTTGGACTTGTCCCAAAACTATTTGGTTGGCATGATTCCAAAATCCTTGGAGACAATTCGTGATCTCAAATTTATCAATCTTTCTTATAACATGTTAGAAGGTGAGATTCCCAACAGTGGAGCTTTCAAAAATTTCACAGCTCAATCTTTCATATTCAATAAAGCACTTTGTGGAAATGCAAGGTTACAAGTCCCCCCATGCAGTGAATTAATGAAGAGAAAAAGGTCAAATGCACATATGTTTTTCATCAAATACATATTGCCTGTAATGTTGTCAACCATTTTGGTTGTTTTATGTGTATTCCTTATGAAAAAGTGTCAAAGAAAAAATGGTGGTGGTGGTGATCCTGCTGAAGTGAGTTCGTCAACTTTACTAGCAACAACAATGATTTCCTACAATGAACTTTCACGGGCAACCAATGGATTTGATGAGAGTAATTTGCTTGGTAAAGGAAGTTTTGGTTCTGTGTTCAAAGGTATACTTCCAAATGGGATAGTTGTTGCTGTCAAATTATTTAATCTGGACCTTGAATTAGGATCAAGGAGCTTCAGTGTAGAATGTGAAGTAATGCGCAATCTGCGTCACCGAAATCTCATCAAGATCATTGGTAGTTGTTCAAATCCTGATTACAAGCTTTTAGTAATGGAATTCATGTCCAATGGGAACCTTGAAAGATGGTTGTATTCTCATAACCATTTTTTAGACTTCATGCAAAGGCTAAATCTAATGATAGATGTGGCTTCTGCATTGGATTACATGCATCATGGTGCTTCACCAACTGTGGTTCATTGTGATGTAAAGCCTAGTAATGTCTTGTTGGATGAAGACATGGTTGCCCATGTTAGTGACTTTGGCATTGCCAAACTTCTTGATGAAGGACAATCCCAAGAGTATACCAAGACCATGGCTACATTTGGCTACATTGCACCAGAGTTTGGATCCAAGGGGACTATTTCTACAAAAGGAGATGTGTACAGTTTTGGGATTTTGTTGATGGAAACATTCTCAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGCAGGATTGAGCATGAAAGGTTGGATTAGTGAATCATTACCCCATGCCATTACTCAAGTCGTGGATTCCAATTTGTTAGAGGATGAAGAATATCGTGCTGATGACATAATATCATCTATATCATCTATTTATAGAATAGCCTTGAATTGTTGTGCAGATTTGCCTGAAGAACGAATGAATATGACAGATGTTGCTGCATCATTAATCAAAATCAAGGTCATGTTTCCAAAAAATAACAAGTACATGCAACCTAAGTTTATATAG 3639 0.3831 MEKLLCFSFRVFTFSLHCFMALTLALSGTNFTTDKLALLALKSSITKDPYYFLTHNWSATTSLCNWVGVTCDAYHGRVRTLNLGDMALSGTIPSHLGNLTFLNKLDLGGNKFHGQLPEELVHLRRLKFLNLSYNEFGGNVPAWIGGLSELRYLYLGNNNFGGFIPKSIFNLTRLEILAWSHNLIQGTIPPEVGKMTQLRALSMSSNRLSGTIPRTISNLSSLEKISVSYNSLSGGIPSEIGELPQLGILYLGDNPLGGSIPSTIFNNSMLQDIEFGSSNLSGSLPSNLCQGLPNIQILYLGFNQFSGKLPSVWNQCKVLTDVDLSQNRFSRGTIPDDIGNLPMLNSIYLDEDNLEGEIPFSLFNISSMRVLSLEQNKLNGSLTEEMFHQLPFLQILSLDNNQFVGSIPRSIGNCTMLEELYLGSNSFTGSIPEEIGDLPMLANISLGSNHLNGSIPSNIFNMSSLTYLYLGINSLSGFLPLHMGIENLEELYLNENQLGGNILSSLSNASKLNYVDLKFNKFNGIIPGSLGNLRYLQRLDVAFNNLTTDASTIELSFLSSLNYLQITGNPMHGSLPKSIGNMSNLEQFMADQCKIDGKIPLEIGNLSNLFALSLYHNDLSGTIPTTISNLQSLQYLRLGNNQLQGTIIDELCAINRLSELVITENKQISGMIPTCFGNLTSLRKLYLNSNRLNKVPSSLWSLRDILELNLSDNALTGFLPLDVGNLKAAIFLDLSWNQISGSIPRAMTGLQNLQILNLAHNKLEGDIPDSFGSLISLTYLDLSQNYLVGMIPKSLETIRDLKFINLSYNMLEGEIPNSGAFKNFTAQSFIFNKALCGNARLQVPPCSELMKRKRSNAHMFFIKYILPVMLSTILVVLCVFLMKKCQRKNGGGGDPAEVSSSTLLATTMISYNELSRATNGFDESNLLGKGSFGSVFKGILPNGIVVAVKLFNLDLELGSRSFSVECEVMRNLRHRNLIKIIGSCSNPDYKLLVMEFMSNGNLERWLYSHNHFLDFMQRLNLMIDVASALDYMHHGASPTVVHCDVKPSNVLLDEDMVAHVSDFGIAKLLDEGQSQEYTKTMATFGYIAPEFGSKGTISTKGDVYSFGILLMETFSRKKPTDELFVAGLSMKGWISESLPHAITQVVDSNLLEDEEYRADDIISSISSIYRIALNCCADLPEERMNMTDVAASLIKIKVMFPKNNKYMQPKFI 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01520 1212 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515
Pumo6g01520 1212 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 284 - -
Pumo6g01520 1212 Gene3D Transferase(Phosphotransferase) domain 1 997 1208 - -
Pumo6g01520 1212 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 554 849 - -
Pumo6g01520 1212 FunFam Leucine-rich repeat receptor-like protein kinase 31 189 - -
Pumo6g01520 1212 ProSiteProfiles Leucine-rich repeat profile. 752 774 IPR001611 GO:0005515
Pumo6g01520 1212 FunFam Serine-threonine protein kinase plant-type 901 996 - -
Pumo6g01520 1212 SMART LRR_sd22_2 195 221 - -
Pumo6g01520 1212 SMART LRR_sd22_2 485 508 - -
Pumo6g01520 1212 SMART LRR_sd22_2 679 704 - -
Pumo6g01520 1212 SMART LRR_sd22_2 147 173 - -
Pumo6g01520 1212 SMART LRR_sd22_2 606 632 - -
Pumo6g01520 1212 SMART serkin_6 921 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01520 1212 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 997 1205 - -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 290 386 IPR032675 -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 387 483 IPR032675 -
Pumo6g01520 1212 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Pumo6g01520 1212 ProSiteProfiles Protein kinase domain profile. 921 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01520 1212 Pfam Protein kinase domain 922 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01520 1212 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Pumo6g01520 1212 Pfam Leucine rich repeat 752 811 IPR001611 GO:0005515
Pumo6g01520 1212 Pfam Leucine rich repeat 656 715 IPR001611 GO:0005515
Pumo6g01520 1212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1040 1052 IPR008271 GO:0004672|GO:0006468
Pumo6g01520 1212 Gene3D Phosphorylase Kinase; domain 1 893 996 - -
Pumo6g01520 1212 SUPERFAMILY RNI-like 487 817 - -
Pumo6g01520 1212 SUPERFAMILY L domain-like 332 481 - -
Pumo6g01520 1212 SMART LRR_typ_2 99 123 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 630 655 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 147 171 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 195 219 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 365 389 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 243 267 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 679 702 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 750 773 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 390 414 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 774 797 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 438 462 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 292 316 IPR003591 -
Pumo6g01520 1212 SMART LRR_typ_2 485 510 IPR003591 -
Pumo6g01520 1212 SUPERFAMILY Protein kinase-like (PK-like) 900 1195 IPR011009 -
Pumo6g01520 1212 ProSitePatterns Protein kinases ATP-binding region signature. 927 949 IPR017441 GO:0005524
Pumo6g01520 1212 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 459 1194 - -
Pumo6g01520 1212 FunFam Leucine-rich repeat receptor protein kinase EMS1 385 482 - -
Pumo6g01520 1212 SUPERFAMILY L domain-like 43 380 - -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 552 854 IPR032675 -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 182 289 IPR032675 -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 484 551 IPR032675 -
Pumo6g01520 1212 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01520 Pumo-Chr6 21026853 21036757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01520 29 1196 Receptor kinase-like Gene Family AT5G07280 33.033 6.28e-176 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo6g01520 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01520 - K13420 gmx:100784397 2154.41