Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01507 ATGGAAAAGGAGCCTCTGCTCCCATATTTCAGCCCCAGAAAGAAGCCTCCACCATTGCCACAACTATGCCCTTTGCCAGAACACGATGAATTCGTTCTTCCTATGACCCCTTTGGAATTCAAGGACCGTCTCATCTTTGGTCCTTATCCTTCCTCTGCTTCCCCCAGGGACCCTTCACCTTTGGCTGATGCCTTAACATTCCCCCTCAATTCCCCAAAATGTTCCTCTTCCACCTCACAGGACTATGCATCACCACAACTATTTGATTCCCAACAACAACAACTCTCTTCTTGGCTCCTTGACCCCAATTACGAGTCATGGCGGAAAACAAACCTTCACCGATCGAAAACCGCGCCAGCCATGGCCGTGATCAGCGATTTCAACCCCCAAACCACCGTGCAAAGACCCCAATTTGCCAGCCAGAGTATTGTACGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGGCACTGAGACTCATCCTATAGTTGATGCATTGTATTTTTGTATAGTCACAATGTGCACAATAGGGTATGGTGACATCACTCCCAATAGTGCAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCACATGTTGAGGGCAGTGCAGGGGAGGAGGGGTGAGAAGGATGGGAAGTCCTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCATTGGCGTTGGGGGTTGTGGTGATTTGTATTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTCGGTTATGTCGGTTACAACGGTTGGGTATGGAGACCACGCATTCAAGACCTTGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCAACGCTTGCTGTGGCCCGAGCTTTCCTCTATTTGGCAGAAGCAAGAGTGGATAAGCGGCATAGGACGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTCGCTGAGTTTCTTGCTGCAGACATAGACAATAATGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTGAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTCAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACTCTTGCTGATCTTATGGAGAATCATAATTGA 1287 0.4584 MEKEPLLPYFSPRKKPPPLPQLCPLPEHDEFVLPMTPLEFKDRLIFGPYPSSASPRDPSPLADALTFPLNSPKCSSSTSQDYASPQLFDSQQQQLSSWLLDPNYESWRKTNLHRSKTAPAMAVISDFNPQTTVQRPQFASQSIVRQGVILLALYLALGVVIYWFNRHNFTGTETHPIVDALYFCIVTMCTIGYGDITPNSAATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLRAVQGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRTMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMENHN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01507 428 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Pumo6g01507 428 Gene3D - 272 335 - -
Pumo6g01507 428 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g01507 428 Pfam Ion channel 274 343 IPR013099 -
Pumo6g01507 428 Pfam Ion channel 150 229 IPR013099 -
Pumo6g01507 428 Gene3D - 141 242 - -
Pumo6g01507 428 Gene3D - 336 428 - -
Pumo6g01507 428 SUPERFAMILY Voltage-gated potassium channels 140 229 - -
Pumo6g01507 428 FunFam Two-pore potassium channel 3 251 365 - -
Pumo6g01507 428 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 152 402 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo6g01507 428 FunFam Two-pore potassium channel 5 132 242 - -
Pumo6g01507 428 PRINTS Two pore domain K+ channel signature 186 214 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo6g01507 428 PRINTS Two pore domain K+ channel signature 306 315 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pumo6g01507 428 SUPERFAMILY EF-hand 366 424 IPR011992 -
Pumo6g01507 428 SUPERFAMILY Voltage-gated potassium channels 258 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01507 Pumo-Chr6 20859802 20867466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01507 4 425 Ion Channels AT4G18160 63.805 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01507 K05389 - gmx:100804249 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01507 6 20859802 20867466 Pumo6g01507 6 20859802 20867466 ECH