Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01506 ATGTCTGTTGAACCTAAGGAACTTTACTACCAGGACCTTGTCCTAGACCACAATAATAATAATAATCAGCAGGGCACAGGAGCAGGATCTAACAACACCATGTACGAAAAGCACTTTTCTTCCTCTTCCTTAATCCCTGCAGGTTCAACAGCATATGATTCATCACAAGCCTTTGATCCCTCTTATATGAGCTTCACTGAGTGTTTGCAAGGGGCCATGGACTACAATTCACTTGCAACTTCCTTTGGCCTTTCTCCTTCCTCATCTGAGGTTTTTTCTTCTGTTGAAGGGAACCAAAAGCCTGTAGCAGAAGGAGGAGATGGAGGGGGTGGTAGTGGTGGTGGCAGTGAAACCCTTGCGACCCTTAACTCGTCTATCTCTTCTTCATCTTCTGAAGCCGGGGCTGAGGAAGATTCAGGAAAGAGCAAAAAAGAAAGGCAGGTGAAAACAGAAGAAGGAGGAGAAAACTCTAAGAAAGGGAACAAGGAGAAGAAGAAAGTAGAGAAGAAGCAGAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTACCCAAGGAGCTACTACAGGTGCACTACCCAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACTTCCCTTAGAGGGAATGCGGCTGCAGGAATGTTCACACCTTCTTTGCTAGCCACATCAACTCCACTCGCAGCCGGGTCAAACTTCCCTCAAGATCTCTTCCTTCACATGCATCATCATCACCCTCACTATCACCATCACATTCACAACACCCTCTTCACCACACAATCGACAAACGCTATTGCTACTGCTGCTACTACTGCTACTCCGTCCTCCATTTACTCTTCCTATAACAACATTAACAACTCTCTTCTTCACAACCAGTTTCTTCCTCCGGAATATGGCCTCCTTCAAGATATAGTCCCTTCCATGTTCCACGACAAGACCCACCATCACCAGAATTAA 1086 0.4622 MSVEPKELYYQDLVLDHNNNNNQQGTGAGSNNTMYEKHFSSSSLIPAGSTAYDSSQAFDPSYMSFTECLQGAMDYNSLATSFGLSPSSSEVFSSVEGNQKPVAEGGDGGGGSGGGSETLATLNSSISSSSSEAGAEEDSGKSKKERQVKTEEGGENSKKGNKEKKKVEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSLLATSTPLAAGSNFPQDLFLHMHHHHPHYHHHIHNTLFTTQSTNAIATAATTATPSSIYSSYNNINNSLLHNQFLPPEYGLLQDIVPSMFHDKTHHHQN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01506 361 MobiDBLite consensus disorder prediction 116 135 - -
Pumo6g01506 361 SUPERFAMILY WRKY DNA-binding domain 179 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01506 361 MobiDBLite consensus disorder prediction 86 174 - -
Pumo6g01506 361 FunFam WRKY transcription factor 57 173 247 - -
Pumo6g01506 361 SMART WRKY_cls 187 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01506 361 ProSiteProfiles WRKY domain profile. 182 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01506 361 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 288 IPR044810 GO:0003700
Pumo6g01506 361 Gene3D WRKY domain 173 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01506 361 MobiDBLite consensus disorder prediction 136 174 - -
Pumo6g01506 361 Pfam WRKY DNA -binding domain 188 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01506 Pumo-Chr6 20822170 20824323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01506 54 352 WRKY Transcription Factor Family AT4G18170 50.000 8.75e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g01506 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01506 - - gmx:100787050 515.383