Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01501 ATGTTGTCCCTAAAGATTAGTTTGACTACAGTCATAATCTTTTCCATTGTATCCATAGTTTCCCATGCTGAAACAAGCTTGGATGTTGAAATTCAAGCTTTGAAAGCTTTCAAGAACTCCATCACTGCTGACCCAAATGGGGCTCTTGCAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGCATGTGATCCATCTTCAAATCATGTCATTTCAATTTCTCTGGTTAGTCTTCAGCTCCAAGGGGAGATTTCACCTTTCCTTGGAAACATTTCTGGCCTTCAGCTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCAGTCTTTGCACTCACCTTTCTGAACTCTCTCTTGTTGACAATTCATTATCAGGTCCTATCCCTCGTGAATTAGGAAACCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCAGACAGCATATTCAACTGCACTTCTTTGTTGGGGATTGCTTTTAATTTCAACAACCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAATGCTACACAGATTTTAGGTTATGGAAATAACTTGCTAGGGTCCATACCTCTTTCCATAGGTCAGTTAGGAGCTTTGCGAGCTCTTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTATAGAGATTGGAAATCTGACAAATTTAGAATACCTTCTATTGTTCCAAAATTCCTTGAGTGGGAAAATCGCTGCCGAACTTGCTAAGTGTAGCAAGCTTTTAAACCTTGAGTTATATGAAAATCAGTTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGGAGACTTTGAGGTTATATCACAATAACTTGAATTCTTCCATTCCATCTTCCATATTCCAGTTGAAATCATTAACACACTTAGGACTCTCAGAGAACATATTGGAGGGAACAATATCTTCTGAGATTGGATCTCTGAGTTCCTTACAAGTTCTAACCCTGCATTTAAATGTGTTTACTGGGAAGATCCCTTCATCAATAACAAACTTGACAAACTTGACGTATCTGTCAATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGAAGTTCCTTGTTTTGAACTCCAACTACTTTCATGGATCCATTCCCTCTAGCATTACCAATATTACTAGTCTAGTAAATGTCAGTTTGTCTTTTAATGCTTTAACTGGGAAAATTCCCGAGGGTTTTTCAAGGTCACCTAATCTTACTTTCCTGTCTCTTACATCCAACAAAATGACTGGGGATATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAACAACTTCAGTGGATTGATAAAATCAGGTATCCAGAACCTGTCTAAACTCATACGCCTGCAGCTGAATGCAAATTCTTTCATAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCGTCACTTTATCCCTTTCTGAAAATAAGTTTTCAGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCACCTTCAGGGGCTCACTCTATATGCCAATGAATTAGAAGGTGCAATACCTGATAAGCTCTCTGAATTAAAAGAACTAACCGAACTTATGCTGCATCAAAACAAATTGGTTGGTCAAATACCTGATTCTCTCTCAAAGCTTGAGATGCTTTCATACTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGAAGCTTAATCAGCTTTTAGCATTGGATCTCTCTCGCAACCAGCTCACAGGATCAATTCCCGGAGATGTCATTGCACGCTTCAAACACATGCAGATCTATCTTAACCTTTCTTACAACCACTTGGTCGGAAATGTTCCAACTGAGTTGGGCATGTTGGAGATGATACAAGCTATTGACATTTCAAACAATAATCTTTCCGGTGTTATTCCGAAAACACTTGCTGGGTGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACAATCTTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTCAAAGCTTAAACCTCTCAAGAAATCATTTAGAAGGTGAAATCCCTGAAATATTGGCAGAACCTGATCATCTTAGCTCCCTAGATCTTTCTCGGAATGACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAACCCTTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCTGTACCCAAGACCGGAATATTTGCACACATCAATGCATCTAGTATGGTGGGAAACCAGGATCTTTGTGGAGCTAAATTCCTATCACCATGCAGAGAGACAAAACAGTCACTATCCAAGAAGAGCATATCTATTATTGCTTCACTTGGATCTCTTGCTATACTTCTACTTCTAGTGATTCTAGTTCTCAATCGAGGCACCAAACTCTGCAATTCTAAAGAAAGAGATGTTAGTGTAAATCATGGACCAGACTACAATTCAACATTGACACTTAAAAGGTTCAATCCAGAGGAGTTGGAGAATGCCACAGGTTTTTTCCGTGCAGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAGGATGGCCAGGTTGTAGCCATAAAAAGATTGAATTTGCAACAATTCTCTGCAAATACTGACAAGATGTTCAAGAGAGAAGCCAACACCTTGAGCCAGATAAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCAAAATACATGGCAAAGGGGTAGATCAGTCTGTGATCTCCAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCATTGGATTATCTGCACTCTGGTTATCATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATCCTTCTGGATAGAGAGTGGGAAGCTCATGTCAGTGACTTTGGGACAGCTCGAATAGTTGGGCTTCATCTGCAGGATGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTATATGGCACCGGAATTTGCCTACATGAGGAAAGTAACGACTAAAGCAGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCGACAGGACTCTCAGAAGAGGATGGTTTGCCAATCACTTTGCGTGAAGTAGTGGCAAGAACCCTTGAAAATGGAATAGAACAACTTGCCAAAATTGTGGACCCTTTCTTGACCTGGAATGTTATAAATGACCATGACGAAGTGTTGCCAGAGCTCATTAAGTTATCCTTGTCCTGCACCCTCCCTGATCCTGAACATCGACCCAATATGAATGAGGTGGTATCTTCCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA 3492 0.4058 MLSLKISLTTVIIFSIVSIVSHAETSLDVEIQALKAFKNSITADPNGALADWVDSHHHCNWSGIACDPSSNHVISISLVSLQLQGEISPFLGNISGLQLFDITSNSFTGYIPAQLSLCTHLSELSLVDNSLSGPIPRELGNLKSLQYLDLGNNFLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNATQILGYGNNLLGSIPLSIGQLGALRALDFSQNKLSGVIPIEIGNLTNLEYLLLFQNSLSGKIAAELAKCSKLLNLELYENQFIGSIPPELGNLVQLETLRLYHNNLNSSIPSSIFQLKSLTHLGLSENILEGTISSEIGSLSSLQVLTLHLNVFTGKIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLHNLKFLVLNSNYFHGSIPSSITNITSLVNVSLSFNALTGKIPEGFSRSPNLTFLSLTSNKMTGDIPDDLYNCSNLSTLSLAMNNFSGLIKSGIQNLSKLIRLQLNANSFIGPIPPEIGNLNQLVTLSLSENKFSGQIPPELSKLSHLQGLTLYANELEGAIPDKLSELKELTELMLHQNKLVGQIPDSLSKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLALDLSRNQLTGSIPGDVIARFKHMQIYLNLSYNHLVGNVPTELGMLEMIQAIDISNNNLSGVIPKTLAGCRNLFNLDFSGNNLSGPIPAEAFSHMDLLQSLNLSRNHLEGEIPEILAEPDHLSSLDLSRNDLKGTIPEGFANPSNLVHLNLSFNQLEGPVPKTGIFAHINASSMVGNQDLCGAKFLSPCRETKQSLSKKSISIIASLGSLAILLLLVILVLNRGTKLCNSKERDVSVNHGPDYNSTLTLKRFNPEELENATGFFRADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSANTDKMFKREANTLSQIRHRNLVKVLGYAWESGKMKALVLEYMENGNLDSKIHGKGVDQSVISRWTLSERVRVFISIASALDYLHSGYHFPIVHCDLKPSNILLDREWEAHVSDFGTARIVGLHLQDGSTLSSSAALQGTVGYMAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGLPITLREVVARTLENGIEQLAKIVDPFLTWNVINDHDEVLPELIKLSLSCTLPDPEHRPNMNEVVSSLVKLQTTLSC 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01501 1163 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Pumo6g01501 1163 SUPERFAMILY RNI-like 293 708 - -
Pumo6g01501 1163 ProSiteProfiles Protein kinase domain profile. 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase 548 620 - -
Pumo6g01501 1163 SUPERFAMILY L domain-like 629 782 - -
Pumo6g01501 1163 CDD STKc_IRAK 872 1157 - -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 470 552 IPR032675 -
Pumo6g01501 1163 Pfam Leucine rich repeat 652 710 IPR001611 GO:0005515
Pumo6g01501 1163 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 27 182 - -
Pumo6g01501 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Pumo6g01501 1163 SMART serkin_6 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 945 1162 - -
Pumo6g01501 1163 Gene3D Phosphorylase Kinase; domain 1 830 944 - -
Pumo6g01501 1163 SMART LRR_typ_2 286 310 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 648 671 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 598 622 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 502 526 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 746 770 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 214 238 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 697 721 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 358 382 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 550 574 IPR003591 -
Pumo6g01501 1163 SMART LRR_typ_2 142 166 IPR003591 -
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 826 944 - -
Pumo6g01501 1163 Pfam Protein kinase domain 868 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01501 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 405 1156 - -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 623 799 IPR032675 -
Pumo6g01501 1163 Gene3D Transferase(Phosphotransferase) domain 1 945 1162 - -
Pumo6g01501 1163 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 375 469 IPR032675 -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 259 374 IPR032675 -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 188 427 - -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 177 258 IPR032675 -
Pumo6g01501 1163 Coils Coil 1157 1163 - -
Pumo6g01501 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 621 795 - -
Pumo6g01501 1163 Gene3D Ribonuclease Inhibitor 553 622 IPR032675 -
Pumo6g01501 1163 SUPERFAMILY Protein kinase-like (PK-like) 843 1154 IPR011009 -
Pumo6g01501 1163 SUPERFAMILY RNI-like 75 396 - -
Pumo6g01501 1163 FunFam Inactive leucine-rich repeat receptor-like protein kinase 448 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01501 Pumo-Chr6 20745580 20749735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01501 20 1158 Receptor kinase-like Gene Family AT5G46330 53.692 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo6g01501 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01501 K13420 - gmx:100817960 2043.47