Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01499 ATGCAACCTGTTTCGTTATACCGGGATGACCTCATTAGTTTGACTATCGGCATAGTCCTTTCCATTGTATCCATAGTTTCCCATGCTGAAACAAGCTTGGATGTTGAAATTCAAGCTTTGAAAGCTTTCAAGAACTCCATCACTGCTGACCCAAATGGGGCTCTTGCAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGCATGTGATCCATCTTCAAATCATGTCATTTCAATTTCTCTGGTTAGTCTTCAGCTCCAAGGGGAGATTTCACCTTTCCTTGGAAACATTTCTGGCCTTCAGCTTTTTGATATAACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCAGTCTTTGCACTCACCTTTCTGAACTCTCTCTTGTTGACAATTCTTTATCAGGTCCTATCCCTCCTGAATTAGGAAACCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGGATTGCTTTTAATTTCAACAACCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAATGCTACACAGATTTTAGGTTATGGAAATAACTTGGTAGGGTCTATACCTCTTTCCATAGGTCAGTTAGGAGCTTTGCGAGCTCTTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTATAGAGATTGGAAATCTGACAAATTTAGAATACCTTCTATTGTTCCAAAATTCCTTGAGTGGGAAAATCCCTGCCGAACTTGCTAAGTGTAGCAAGCTTTTAAACCTTGAGTTATATAAAAATCAGTTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGGAGACTTTGAGGTTATATCACAATAACTTGAATTCTTCCATTCCATCTTCCGTATTCCAGTTGAAATCATTAACACACTTAGGACTCTCAGAGAACATATTGGAGGGAACAATATCTTCTGAGATTGGATCTCTGAGTTCCTTACAAGTTCTAACCCTGCATTTAAATGCGTTTACTGGGAAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCGATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGAAGTTTCTTGTTTTGAACTCCAACTACTTTCATGGATCCATTCCATCTAGCATTACCAATATTACTAGTCTAGTAAATGTCAGTTTGTCTTTTAATTCTTTAACTGGGAAAATTCCCGAGGGTTTTTCAAGGTCACCTAATCTTACTTTCCTGTCTCTTGCATCCAACCAAATGACTGGGGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAACAACTTCAGTGGATTGATAAAATCAGGTATCCAGAACCTGTCTAAACTCATTCGCCTGCAGCTGAATGCAAATTCTTTCATAGGACCAGTTCCACCAGAGATTGGGAACTTGAATCAACTCGTCACTTTATCCCTTTCTGAAAATAAGTTTTCAGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCACCTTCAGGGACTCACTCTATATGCCAATCAATTAGAAGGTGCAATACCTGATAAGCTCTCTGAATTAAAAGAACTAACCGAGCTTATGCTGCATCAAAACAAGTTGGTTGGTCAAATACCTGATTCTCTCTCAAAGCTTGAGATGCTTTCATATTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGAAGCTTAATCAGCTTTTAGCATTGGATCTCTCTCACAACCAGCTCACAGGATCAATTCCCGGAGATGTCATTGCACGCTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTCGGAAATGTTCCAACTGAGTTGGGCATGTTGGAGATGATACAAGCTATTGACATTTCAAACAATAATCTTTCGGGTTTTATTCCGAAAACACTTGCTGGGTGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACAATCTTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTCAAAGCTTAAACCTCTCAAGAAATCATTTAGAAGGTGAAATCCCTGAAATATTGGCAGAACTTGATCATCTTAGCTCCCTAGATCTTTCTCGGAATGACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAACCTTTCCAACTTGGTGCATCTTAACCTTTCCTTCAATCGACTTGAAGGTCCTGTACCCAAGACCGGAATATTTGCACACATCAATGCATCTAGTATGGTGGGAAACCAGGATCTTTGTGGAGCTAAATTCCTATCACCATGCAGAGAGACAAAACATTCACTATCCAAGAAGAGCATATCTATTATTGCTTCACTTGGATCTCTTGCTATACTTCTACTTCTAGTGATTCTAGTTCTCAATCGAGGCACCAAACTCTGCAATTCTAAAGAAAGAGATGTTAGTGTAAATCATGGACCAGACTACAATTCAGCATTGACACTTAAAAGGTTCAATCCAGAGGAGTTGGAGAATGCCACAGGTTTTTTCAGTGCAGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAGGATGGCCAGGTTGTAGCCATAAAAAGATTGAATTTGCAACAATTCTCTGCAAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGGCAAAGGGGTAGATCAGTCTGTGATCTCTAGGTGGACATTATCCGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCATTGGATTATCTGCACTCTGGTTATCATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATCCTTTTAGATAGAGAGTGGGAAGCTCATGTCAGTGACTTTGGGACAGCACGAATACTTGGTCTTCAACAGCAGGATGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGTTATATGGCACCAGAATTTGCTTACATGAGGAAAGTAACCACTAAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCGACAGGACTCTCAGAAGAGGATGGTTTGCCAATCACTTTGCGTGAAGTAGTGGCAAAAGCCCTTGCAAATGGAATAGAACAACTGGTCAATATTGTTGACCCTTTGTTGACCTGCAATGTTACAAAAGATCATGATGATGTGTTGGCAGAGCTCTTTAAGTTATCTCTGTGCTGCACCCTCGCTGATCCTGAACATCGACCCAATACGAATGAGGTGCTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA 3510 0.4054 MQPVSLYRDDLISLTIGIVLSIVSIVSHAETSLDVEIQALKAFKNSITADPNGALADWVDSHHHCNWSGIACDPSSNHVISISLVSLQLQGEISPFLGNISGLQLFDITSNSFTGYIPAQLSLCTHLSELSLVDNSLSGPIPPELGNLKSLQYLDLGNNFLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNATQILGYGNNLVGSIPLSIGQLGALRALDFSQNKLSGVIPIEIGNLTNLEYLLLFQNSLSGKIPAELAKCSKLLNLELYKNQFIGSIPPELGNLVQLETLRLYHNNLNSSIPSSVFQLKSLTHLGLSENILEGTISSEIGSLSSLQVLTLHLNAFTGKIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLHNLKFLVLNSNYFHGSIPSSITNITSLVNVSLSFNSLTGKIPEGFSRSPNLTFLSLASNQMTGEIPDDLYNCSNLSTLSLAMNNFSGLIKSGIQNLSKLIRLQLNANSFIGPVPPEIGNLNQLVTLSLSENKFSGQIPPELSKLSHLQGLTLYANQLEGAIPDKLSELKELTELMLHQNKLVGQIPDSLSKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLALDLSHNQLTGSIPGDVIARFKDMQMYLNLSYNHLVGNVPTELGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNNLSGPIPAEAFSHMDLLQSLNLSRNHLEGEIPEILAELDHLSSLDLSRNDLKGTIPEGFANLSNLVHLNLSFNRLEGPVPKTGIFAHINASSMVGNQDLCGAKFLSPCRETKHSLSKKSISIIASLGSLAILLLLVILVLNRGTKLCNSKERDVSVNHGPDYNSALTLKRFNPEELENATGFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSANTDKIFKREANTLSQMRHRNLVKVLGYAWESGKMKALVLEYMENGNLDSIIHGKGVDQSVISRWTLSERVRVFISIASALDYLHSGYHFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLQQQDGSTLSSSAALQGTVGYMAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGLPITLREVVAKALANGIEQLVNIVDPLLTCNVTKDHDDVLAELFKLSLCCTLADPEHRPNTNEVLSALVKLQTTLSC 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01499 1169 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515
Pumo6g01499 1169 CDD STKc_IRAK 878 1163 - -
Pumo6g01499 1169 SUPERFAMILY L domain-like 36 306 - -
Pumo6g01499 1169 SUPERFAMILY Protein kinase-like (PK-like) 851 1164 IPR011009 -
Pumo6g01499 1169 SUPERFAMILY L domain-like 532 792 - -
Pumo6g01499 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 411 1161 - -
Pumo6g01499 1169 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1000 1012 IPR008271 GO:0004672|GO:0006468
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 627 801 - -
Pumo6g01499 1169 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 436 - -
Pumo6g01499 1169 ProSiteProfiles Protein kinase domain profile. 872 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01499 1169 PRINTS Leucine-rich repeat signature 727 740 - -
Pumo6g01499 1169 PRINTS Leucine-rich repeat signature 607 620 - -
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 951 1168 - -
Pumo6g01499 1169 SMART LRR_typ_2 727 750 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 220 244 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 556 580 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 364 388 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 148 172 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 604 628 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 751 776 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 508 532 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 292 316 IPR003591 -
Pumo6g01499 1169 SMART LRR_typ_2 703 726 IPR003591 -
Pumo6g01499 1169 SMART serkin_6 872 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01499 1169 Gene3D Ribonuclease Inhibitor 269 434 IPR032675 -
Pumo6g01499 1169 Gene3D Ribonuclease Inhibitor 510 801 IPR032675 -
Pumo6g01499 1169 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Pumo6g01499 1169 SUPERFAMILY L domain-like 331 622 - -
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 832 950 - -
Pumo6g01499 1169 Pfam Protein kinase domain 874 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01499 1169 Gene3D Transferase(Phosphotransferase) domain 1 951 1168 - -
Pumo6g01499 1169 Gene3D Ribonuclease Inhibitor 435 509 IPR032675 -
Pumo6g01499 1169 Gene3D Ribonuclease Inhibitor 197 268 IPR032675 -
Pumo6g01499 1169 FunFam Inactive leucine-rich repeat receptor-like protein kinase 453 551 - -
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase 554 626 - -
Pumo6g01499 1169 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 33 183 - -
Pumo6g01499 1169 Gene3D Phosphorylase Kinase; domain 1 836 950 - -
Pumo6g01499 1169 Pfam Leucine rich repeat 658 716 IPR001611 GO:0005515
Pumo6g01499 1169 Pfam Leucine rich repeat 558 617 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01499 Pumo-Chr6 20735189 20740008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01499 26 1164 Receptor kinase-like Gene Family AT5G46330 54.214 0.0 1168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo6g01499 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01499 K13420 - gmx:100817960 2073.51