Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01483 ATGGCGAAAAAGGCCAAAGGGTCTAACTCTGCTTCTTCGGCCTCTGCCCCTGCATCTTCCGGGGAGGATTTTCGTAAAGAATTTCAAGTGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTAAAGAATTTGATAGAGCAATGGCAGAATTTAACAAGAAAATGGAAAGTGGCGAGTTTCATGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 297 0.4074 MAKKAKGSNSASSASAPASSGEDFRKEFQVQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRKEFDRAMAEFNKKMESGEFHETDEESEFDE 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01483 98 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 22 79 IPR009071 -
Pumo6g01483 98 SMART hmgende2 14 80 IPR009071 -
Pumo6g01483 98 SUPERFAMILY HMG-box 24 87 IPR036910 -
Pumo6g01483 98 Pfam HMG (high mobility group) box 23 79 IPR009071 -
Pumo6g01483 98 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 22 95 IPR031061 -
Pumo6g01483 98 MobiDBLite consensus disorder prediction 1 19 - -
Pumo6g01483 98 MobiDBLite consensus disorder prediction 1 35 - -
Pumo6g01483 98 Gene3D High mobility group box domain 21 94 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01483 Pumo-Chr6 20365506 20369017 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo6g01483 HMG_box 1.2e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01483 - - gmx:100809401 150.214