Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01480 ATGGCGAAAAAGGCAAAAGGGTCTAACTCTGCTTCTTCGGCCTCTGCCTCTGCCTCTGCATCTTCCGGCAAACCAGTGTTGAGGATTAAATCAGACGAGGGAATCAAGAGATCGATGCGGCAGACTAATTCAAGAAAGAAACCCAAAGCAAAGCAAAAGAAGAACAAACAAAAGTTTGATGCTTTGAAACCAAAGAAACCTCCCACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGATTTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGACATAGCAACAGAAAAACGTAAAGAATTTGATAGAGCAATGGCAGAATTTAACAAGAAAATGGCAAGTGGCGAGTTTGATGAAACTGATGAGGAATCAGAGTTTGATGAATGA 459 0.4052 MAKKAKGSNSASSASASASASSGKPVLRIKSDEGIKRSMRQTNSRKKPKAKQKKNKQKFDALKPKKPPTAFFYFLEDFRKDFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRKEFDRAMAEFNKKMASGEFDETDEESEFDE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01480 152 Pfam HMG (high mobility group) box 64 133 IPR009071 -
Pumo6g01480 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 64 133 IPR009071 -
Pumo6g01480 152 MobiDBLite consensus disorder prediction 1 64 - -
Pumo6g01480 152 SMART hmgende2 63 134 IPR009071 -
Pumo6g01480 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 36 149 IPR031061 -
Pumo6g01480 152 SUPERFAMILY HMG-box 51 139 IPR036910 -
Pumo6g01480 152 Gene3D High mobility group box domain 60 148 IPR036910 -
Pumo6g01480 152 CDD HMG-box_AtHMGB1-like 65 125 - -
Pumo6g01480 152 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01480 Pumo-Chr6 20329125 20332941 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo6g01480 HMG_box 8.4e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01480 - - gmx:100809401 214.542