Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01453 ATGGCCGACGATCCAATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATGCTAAGTTTGGTAGGAAGAAAGTCGCGGAGAATGGCGAGACTGCTGATAAAGCAGTCAGTAATGGAGGTTCGGTGACCATTGTGTCCAATGGCAATTCACATGCCAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCGAAGCGAGGGGCAGAATCAGATTCATGCAAATGGCTTTGCGCCAACCATTATAGATGAAAGGCCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAGGTGATTCAGAAAAGTTAGTGAAAGTGTTGTTTGAACTTGCAAGGCACCATGCACCCTCAACAATATTTCTCGACGAAATTGATGCAATCATCAGTCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTCATTCAGATGGATGGTTTGACGCGGACAGATGAACTGGTTTTTGTTTTAGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCAGACGTCTTGAGAAGCGAATCCTTGTACCGCTTCCAGAACCAGTAGCGAGACGAGCAATGTTTGAGGAACTCCTTCCTCAACAGCCTGACGAGGAACCGATCCCCTATGATATACTGGTGGATAAGACAGAAGGATATTCGGGGTCAGATATCCGATTACTCTGTAAAGAGACAGCAATGCAACCCTTAAGACGCTTGATGTCACAACTTGAGCAGAGACAGGATGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGACCAATCAGATCTGAAGATATAGAGACAGCTTTAAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1212 0.4538 MADDPMPTRWSFQDFKLYYDAKFGRKKVAENGETADKAVSNGGSVTIVSNGNSHAKRASEMAVYEQFRSEGQNQIHANGFAPTIIDERPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQDVVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01453 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Pumo6g01453 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 384 IPR027417 -
Pumo6g01453 403 Gene3D - 291 379 - -
Pumo6g01453 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Pumo6g01453 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 302 - -
Pumo6g01453 403 Gene3D - 118 393 IPR027417 -
Pumo6g01453 403 CDD RecA-like_VPS4-like 125 288 - -
Pumo6g01453 403 Pfam AAA+ lid domain 318 351 IPR041569 -
Pumo6g01453 403 PANTHER AAA DOMAIN-CONTAINING 58 399 - -
Pumo6g01453 403 SMART AAA_5 155 292 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01453 Pumo-Chr6 19884141 19891825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01453 153 362 Calmodulin-binding Proteins AT3G56690 36.150 1.31e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01453 K07767 - gmx:100794098 758.059