Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01444 ATGAAAGAAAGCAAATCATCAGCACCTAAAATGCTTAACCGGAACTGGGTTTTAAAGCGTAAGCGGAGAAAACTTCCTTTAGGACTAGATCAGTCATCTGGTAAAGAGCAATCCAACGGTAAAGAAGAAAATTCACTAACATCTGAATCTTCTAGAAATGCTTCAGCTAAACGTGCGCTAAAGACTGAAGTAGCTACTGATCAAATTTCATCTAATAAGAAGAAAGGAAATGATGGGTATTACTACGAATGCGTGATCTGTGATGTTGGTGGCAACTTATTGTGCTGTGATAGCTGTCCCCGCACGTATCATTTACAATGTCTTGATCCCCCTCTTAAGCGCATCCCCAATGGGAAGTGGCAATGTCCAAGTTGCTTTGAAGAAAATGATCAACTACAGCCCATAAACCACCTGGATCCAATTTCAAAACGAGCAAGGACAAAGATTGTCACAGCAAAATCAAAAGATCAAGTTAACTCACTTAACCTTGAAAAGGTTTTTGGAACTAAACTTGTTTCAAAGAAAAGGTCCTCAAGCAAAGGAAAGCCTATTTCAACTATGGGAGTCAAATTCTTTGGAAAGAAATTATTGTCTTCCCCAGCTGATGAAACTTGTAGCAACAAACCTATTGACCCATCTCTTGGGAGTCCTATGGAAGGAACTTCGTCAGGTGTGGATGCTGATGAAAAGAAATTGAGCCTGTCCCCAACAGACTCCCCTATGGACAGGGAGTCAACTTCACCGGCCAAGAATTACCGCTCTCTAAAATTACTAATTTAG 780 0.4051 MKESKSSAPKMLNRNWVLKRKRRKLPLGLDQSSGKEQSNGKEENSLTSESSRNASAKRALKTEVATDQISSNKKKGNDGYYYECVICDVGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPSCFEENDQLQPINHLDPISKRARTKIVTAKSKDQVNSLNLEKVFGTKLVSKKRSSSKGKPISTMGVKFFGKKLLSSPADETCSNKPIDPSLGSPMEGTSSGVDADEKKLSLSPTDSPMDRESTSPAKNYRSLKLLI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01444 259 MobiDBLite consensus disorder prediction 200 220 - -
Pumo6g01444 259 MobiDBLite consensus disorder prediction 1 74 - -
Pumo6g01444 259 SUPERFAMILY FYVE/PHD zinc finger 78 128 IPR011011 -
Pumo6g01444 259 Pfam PHD-finger 84 126 IPR019787 -
Pumo6g01444 259 MobiDBLite consensus disorder prediction 238 252 - -
Pumo6g01444 259 SMART PHD_3 83 126 IPR001965 -
Pumo6g01444 259 PANTHER PHD FINGER PROTEIN 3 137 - -
Pumo6g01444 259 MobiDBLite consensus disorder prediction 31 57 - -
Pumo6g01444 259 CDD PHD2_CHD_II 84 125 - -
Pumo6g01444 259 ProSitePatterns Zinc finger PHD-type signature. 84 125 IPR019786 -
Pumo6g01444 259 MobiDBLite consensus disorder prediction 200 253 - -
Pumo6g01444 259 ProSiteProfiles Zinc finger PHD-type profile. 81 128 IPR019787 -
Pumo6g01444 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01444 Pumo-Chr6 19674994 19679263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01444 84 125 PHD Transcription Factor Family AT2G36720 57.143 2.27e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo6g01444 PHD 3.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01444 - - gmx:100793933 455.677