Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01418 ATGACATTGAACTCCATGGCTGGTTCTCATTCCCATTACTCACGTGACTCAGACGAGCATCGGCCTCCTACTCGTCATTCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATGAGATTGGATATGGTGAAGATGGGAAGCTGTTTGTGGCTTGCCACGTGTGTCGTTTCCCCGTTTGTCGACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAACACCCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTAGCTGGTGATGATGAGGAGCATTCTGATGCAGACGATTTTCATGATGATCCAGACGAGAAACATGATGTTAATCATTTGGAAAATAAAGACTACAAGGAACAGCAGTGGCATCCCAATGGTCAAGCTTTCTCTTCAGCTGGAAGTGTGGTCGGTAAGGAATTTGAAGGGGAGAAAGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGAAATGGAAAGCCAGGCAAGAAAAGAGAGGTCTTCAAAACAAAGAGGAAGGAAAAGATGACCAAGGAGAAGATGACTACCTTTTGGCTGAGGCAAGGCAACCGTTGTGGCGTAAGGTGCCAATATCTTCAAGCCTAATCAACCCATATCGCATAGTCATAATCATGAGGCTGGTGATCCTAGTTTTCTTCCTCCGTTTCCGTATCTTAACTCCAGCATACGATGCATATCCACTGTGGCTTGCCTCTGTGATATGTGAAATATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATCACTCGTGAAACTTACTTGGACCGCTTGTCCATAAGGTTTGAGCGTGAAGGGGAACCAAACCTTCTAGCCCCGGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAGGAACCTCCCATTATAACTGCAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGAGAAGGTGTGCTGCTATGTATCTGATGATGGTGCATCTATGCTCCTGTTTGATACACTGTCAGAAACTTCTGAGTTTGCAAGAAGATGGGTTCCTTTTTGCAAGAAGTATAACATAGAGCCAAGGGCACCTGAGTTCTATTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCACCCCACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAATGCCTTAGTGGCAAAAGCTCAGAAGAAACCAGAGGAGGGGTGGGTAATGCAGGATGGCTCCCCTTGGCCTGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGGTGGTGCATTGGACGTAGAAGGCAAGGAACTGCCACGGCTTATGTACATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTTCAAATGCACCTTTCATGTTGAATCTGGACTGTGACCATTACATCAACAACAGCAAGGCTATAAGAGAGGCTATGTGCTTTTTGATGGACCCCCAGCTAGGGAAGAAGCTCTGTTATGTCCAATTTCCGCAAAGATTCGATGGTATTGATCGGCATGATAGATATGCTAATCGCAACATTGTGTTCTTTGATATCAATATGAAAGCCCTTGATGGGATTCAAGGTCCGGTATATGTCGGTACTGGATGTGTGTTCAATAGGCAGGCATTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACTTGTGACTGCTGGCCTTCATGGTGCTGTTGCTGTTGTTGTGGTGGTTCAAGGAAATCCAAGTCAAAGAAGAAATCAGGAGGAGGAGGGGGTCTATTTAGTAGATTATACAGCAAGAAAAAGAAAATGATGGGGAAGAATTATGTTAGGAAAGGGTCTGAGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGATGGGCTAGAGAAATCATCCCTCATGTCCCAGAAACAATTTGAGAAACGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACTTTGATGGAAGATGGTGGACTTCCTGAAGGCACCAATTCCCAATCGCTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGCAAAGAGATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAGAGAGCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCTCTTGGTTCTGTTGAAATTTTCCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAGCTGAAATGGCTAGAGAGGCTGGCTTATACTAATACCATTGTTTATCCATTCACTTCCATCCCTTTGCTTGCATACTGCACAATTCCAGCTGTGTGTCTTCTTACTGGAAAATTCATCATCCCTACTTTGACCAACCTTGCTAGTGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTAGTGTCCTTGAGCTTAGGTGGAGTGGGGTTAGCATTGAAGACTTGTGGCGCAATGAGCAATTTTGGGTCATTGGAGGTGTTTCTGCACACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTAGACACCAATTTCACTGTCACAGCCAAAGCAGCAGATGATAATGAATTTGGAGAGTTGTATCTGTTCAAATGGACAACACTTCTCATTCCACCAACCACTCTTATCATCTTGAATATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGCTATGGTTCATGGGGTCCTTTGTTTGGGAAGCTGTTCTTTGCCTTTTGGGTCATTGTCCACCTATATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGGACTCCTACTATTGTTGTCCTTTGGTCAATTCTTCTAGCATCAATTTTCTCTTTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTACTCAAACAATGTGGAGTAGAATGCTAA 3108 0.4373 MTLNSMAGSHSHYSRDSDEHRPPTRHSASKVCRVCSDEIGYGEDGKLFVACHVCRFPVCRPCYEYERSEGNQCCPQCNTRYKRHKGCPRVAGDDEEHSDADDFHDDPDEKHDVNHLENKDYKEQQWHPNGQAFSSAGSVVGKEFEGEKEFFSNGEWEERLEKWKARQEKRGLQNKEEGKDDQGEDDYLLAEARQPLWRKVPISSSLINPYRIVIIMRLVILVFFLRFRILTPAYDAYPLWLASVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPNLLAPVDVYVSTVDPLKEPPIITANTVLSILAVDYPVEKVCCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVHPTFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGSPWPGNNTRDHPGMIQVYLGSGGALDVEGKELPRLMYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKALDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCCGGSRKSKSKKKSGGGGGLFSRLYSKKKKMMGKNYVRKGSESMFDLEEIEEGLEGYDGLEKSSLMSQKQFEKRFGQSPVFIASTLMEDGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDNEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01418 1035 FunFam Cellulose synthase 15 106 - -
Pumo6g01418 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 106 IPR013083 -
Pumo6g01418 1035 Pfam Zinc-binding RING-finger 23 97 IPR027934 -
Pumo6g01418 1035 MobiDBLite consensus disorder prediction 88 113 - -
Pumo6g01418 1035 CDD mRING-HC-C4C4_CesA 30 80 - -
Pumo6g01418 1035 SUPERFAMILY RING/U-box 16 101 - -
Pumo6g01418 1035 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 839 IPR029044 -
Pumo6g01418 1035 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 193 1002 - -
Pumo6g01418 1035 Pfam Cellulose synthase 290 1028 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo6g01418 1035 FunFam Cellulose synthase 407 581 - -
Pumo6g01418 1035 MobiDBLite consensus disorder prediction 1 25 - -
Pumo6g01418 1035 Coils Coil 388 408 - -
Pumo6g01418 1035 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 396 582 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01418 Pumo-Chr6 19410507 19417398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01418 6 1035 Cell Wall Biosynthesis AT5G17420 65.725 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01418 K10999 - gmx:100780354 2004.95