Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01409 ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAGTGTACCCTCTCTAAAAGATAACTTCCCTCAAACTCTGCCAGACCCTCTACCTCCTCCATCACCTATGGTTGTAGGCAACACCACAAACAGCAACAATAGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTATAACCATCACAATCCACAACACCAAGAAGATGTCTCCACCTATGCAAGTGGAGTCACTGCCACATATATTGACATCCCACATCCACAACATCTAGGTTTGAACATGGGGAATTCCTACATCAACAACAACATGGATAACCATTTGGTGCAAGAGGTCATTGATGCTCTTCCCTATCAGCAGTCCACTTGGGACCCTAATACTATTCAGGAATTACAAGACATGGCCTATGCTAATCACACAGAGCAACAACAACAACAAAATGAACAACAATTTCAGCAAATTGAGACTCAAAACTGCAGTCAAAGCTACAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCGCCAGATCTCCTGAACCTTCTCCACTTGCCAAGATGCTCAGCCTCATCTTTGCTCACCAATCCCTCCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCAATGCCCTTTCTTGGAGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATCTGAACCTGCCTCCACAGCCTCCTGCACTCAGAGAGCTGTTTCAGTCTCTCCCCCGCGGCTATAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGTGGAGGGGATGAAATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACACCTTCTGTTGGCAAAGGAAGGGGAGGCAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAGCTGAATGGAAAATACAAAATCTTGAGGAGTCTCATCCCTAGCCCCACCAAGATTGATAGAGCATCATGTGGTGGGGGATGCCATTGA 1080 0.4639 MSTGDRPKMHEQTGCFDPNTMGESVPSLKDNFPQTLPDPLPPPSPMVVGNTTNSNNSLEENLRLSVEELSYNHHNPQHQEDVSTYASGVTATYIDIPHPQHLGLNMGNSYINNNMDNHLVQEVIDALPYQQSTWDPNTIQELQDMAYANHTEQQQQQNEQQFQQIETQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPSICLTNPTQNTPNFQNPMPFLGDLPIGSDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEIEGDGSQLDMGVLEFNRVTPSVGKGRGGKATKHFATEKQRREQLNGKYKILRSLIPSPTKIDRASCGGGCH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01409 359 MobiDBLite consensus disorder prediction 17 31 - -
Pumo6g01409 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 359 IPR011598 GO:0046983
Pumo6g01409 359 Pfam Helix-loop-helix DNA-binding domain 319 352 IPR011598 GO:0046983
Pumo6g01409 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 353 IPR036638 GO:0046983
Pumo6g01409 359 PANTHER TRANSCRIPTION FACTOR BHLH91 8 353 IPR045895 GO:0006355|GO:0048658
Pumo6g01409 359 MobiDBLite consensus disorder prediction 1 32 - -
Pumo6g01409 359 Coils Coil 148 168 - -
Pumo6g01409 359 Gene3D - 314 354 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01409 Pumo-Chr6 19209125 19211331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01409 9 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 29.282 1.45e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g01409 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01409 - - gmx:100782512 598.586