Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01400 ATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACATGCTCTCGTTAGCCCCCAGAATGGATTTTCTTTAGAACTCACTGCTGCGCTTCTTGCCAAGGACAAGCTCAATGCCTTTGGCATAATGCAGCCCTTCTCTGAAGATGATGACCAGAGGTCTGTCAGAGCTTATGGTATTTACCCGTATGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTTGACACTAATCAACCTGATGGCAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATTGAAGACTATGGCTTCACCTGTAATTGTGACCGATGTAATGTGGAGTCAAATTGGTCAGATCATGATAGCGTTGAAGGTAATGCTGAGGATGAAGAGGAGGTTATGGATGAGGACCAATATGAAACTATGGCAGCATCAGACACTGACAATCATCCCCATGAAGATAATAATGATTTCCCACATGCTTATTTCTTTTTAAAATACATGTGTGAGAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCACGAGGGTGA 687 0.4265 MLSLQGSPDDSTIAAAQFLHPLISSLCSHALVSPQNGFSLELTAALLAKDKLNAFGIMQPFSEDDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNQPDGSHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDHDSVEGNAEDEEEVMDEDQYETMAASDTDNHPHEDNNDFPHAYFFLKYMCERTNCWGTLAPLPPRG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01400 228 MobiDBLite consensus disorder prediction 160 196 - -
Pumo6g01400 228 SMART set_7 26 134 IPR001214 GO:0005515
Pumo6g01400 228 Gene3D SET domain 25 159 IPR046341 -
Pumo6g01400 228 MobiDBLite consensus disorder prediction 167 185 - -
Pumo6g01400 228 ProSiteProfiles SET domain profile. 21 128 IPR001214 GO:0005515
Pumo6g01400 228 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 226 IPR044238 -
Pumo6g01400 228 Pfam SET domain 66 127 IPR001214 GO:0005515
Pumo6g01400 228 SUPERFAMILY SET domain 63 155 IPR046341 -
Pumo6g01400 228 CDD SET_SMYD 52 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01400 Pumo-Chr6 18906604 18907290 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo6g01400 SET 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01400 - - gmx:100783406 450.284