Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01398 ATGTCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCACTAAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCTTTGCCCTTGATCAGACAGTCTTTGTCATCCTCCTCCTCTGCCTCATCTTCCTGCTTCTGTGATCACTGCTTCAGAACCTTGCCTCCTTTACAGGGAGATTCTTCATCATTCACAGTTTTGTGCCCCAATTGTCGCCACCATTGTTTCTGCAGCTCAAATTGTCTTTCAAAGGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCGCCAAGTCCAAGTTAATTTTCTCGTTGCTGCGTACAATCTTGCCAATATCTCCGCTTCAGACTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCAAATGCTCTCATTAGCCCCCAGAATGGATTTTCTTTAGAACTCACTGCTGCGCTTCTTGCCAAGGACAAGCTCAATGCCTTTGGCATAATGCAGCCCTTCTCTGAAGATGATGACCAGAGGTCTGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTTGACACTAATCAACCTGATGCAGCCATAATACTGACTTTATTATTAGGATGA 804 0.4527 MSMAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLIRQSLSSSSSASSSCFCDHCFRTLPPLQGDSSSFTVLCPNCRHHCFCSSNCLSKALNSSHSSWVCQALSHLRANSLLLEQPLERQVQVNFLVAAYNLANISASDFQIMLSLQGSPDDSTIAAAQFLHPLISSLCSNALISPQNGFSLELTAALLAKDKLNAFGIMQPFSEDDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNQPDAAIILTLLLG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01398 267 SUPERFAMILY SET domain 8 250 IPR046341 -
Pumo6g01398 267 Pfam SET domain 19 255 IPR001214 GO:0005515
Pumo6g01398 267 SUPERFAMILY SET domain 8 253 IPR046341 -
Pumo6g01398 267 Gene3D SET domain 184 263 IPR046341 -
Pumo6g01398 267 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 258 IPR044238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01398 Pumo-Chr6 18840834 18844946 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo6g01398 SET 8.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01398 - - gmx:100783406 463.766