Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01385 ATGCAAATAACCCAGGCCTTTGTGGTGTACCATTGCCTGATTGCAAGAATGACAACACCCAACCCACAACAAATCCAAGTGATGATGTTAGCAAAGGAAGGCCACAAAACAGCAACTGCAACATGGGCAAACAGCATTGTAATGGGAATTCTCATCTCTGTTGCTTCTGTGTGTATCTTAATTGTGTGGGCAATTGCAATGCGCGCAAGGAGGAAGGAGGCTGAGGAAGTCAAGATGCTTAATAGCTTACAAGCATGTCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCCCTTAGCATTAATGTGGCTACATTTCAGAGGCAGCTGAGGAAGCTCAAGTTCTCACAGCTGATTGAAGCAACTAATGGCTTCTCAGCAGCAAGCCTTATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGCTCAAGTGTTGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGCGATCGAGAATTCATGGCAGAGATGGAAACCTTAGGGAAGATCAAGCACAGAAACCTTGTCCCTTTGTTGGGGTACTGCAAAGTAGGGGAAGAGAGGCTCCTTGTTTATGAGTACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACGCGTGATAGACGCATTTTGACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCTAAAGGGCTTTGTTTCCTGCACCACAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTCTCAGATTTTGGCATGGCAAGACTAATAAGTGCCCTTGACACACATCTTAGTGTGAGCACACTAGCAGGAACACCTGGATATGTTCCCCCAGAGTACTACCAAAGCTTCAGGTGCACTGCCAAGGGAGATGTTTACTCATTTGGAGTTGTGATGTTGGAACTGCTTAGCGGGAAACGCCCTACTGATAAGGAGGACTTTGGTGACACCAACTTGGTGGGGTGGGCGAAGATGAAGGTACGCGAAGGGAAGCAAATGGAAGTAATTGACAATGACTTGCTTTTGGCAACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATCACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 1275 0.4612 MQITQAFVVYHCLIARMTTPNPQQIQVMMLAKEGHKTATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDNDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01385 424 ProSiteProfiles Protein kinase domain profile. 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01385 424 Gene3D Transferase(Phosphotransferase) domain 1 203 421 - -
Pumo6g01385 424 CDD STKc_IRAK 133 412 - -
Pumo6g01385 424 Gene3D Phosphorylase Kinase; domain 1 86 202 - -
Pumo6g01385 424 FunFam serine/threonine-protein kinase BRI1-like 2 203 420 - -
Pumo6g01385 424 SUPERFAMILY Protein kinase-like (PK-like) 108 409 IPR011009 -
Pumo6g01385 424 FunFam serine/threonine-protein kinase BRI1-like 2 88 202 - -
Pumo6g01385 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Pumo6g01385 424 SMART serkin_6 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01385 424 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 38 411 - -
Pumo6g01385 424 Pfam Protein tyrosine and serine/threonine kinase 131 409 IPR001245 GO:0004672|GO:0006468
Pumo6g01385 424 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01385 Pumo-Chr6 18680687 18681961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01385 41 412 Receptor kinase-like Gene Family AT1G55610 61.497 1.18e-157 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pumo6g01385 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01385 - - gmx:100305360 768.844