Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01361 ATGATTGGAAGTAAAGATCGTGCTGCTGACTCTGAAGGTGAGAACTCCAGGAGCAAGCTTTCAAGGCACAATTTTGAGCCCGGAAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGAGATTCAGAGGTGGGTGGTGGTGGTGGTGGTGGTGGTGTTGATGGGGCTTTTCACTCAAAACCCACCAAGGTTGTTGTTGGTGGTAGCTCAGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCCAAAATTGAGTCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGCTGAATTCCTTGGAAAAAATGAGCCACAAAGGGAAAGAGGTTGTGGTTTGTGAGAATTCAAATCAGGATGGGAAATGGGTGGAAAGAGATTTCCTTAGCCTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAGTAGGGAGAAGAAGCCAAAACTGGAGACACTTAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAACGCCTTGCAAAATGGTGATCAACAACCAGTTAGGACCAAACCTTGCAGGCCAACCACAACTCACACTTCATATTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCACACAACCCAAGCTGTTCACTCACCCGCAATTCAACTGACAATTTTGACTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACTAATGGCTCTGTGCATAGTAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGTCCAACCATGGTGGTGCTGGTATCAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAATCATTCTTTTTTCCCTTCAGAGTTGCCTGCAAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGGAGGAATTCTGAGAATCTGAGAATCTTGGAAGGCTTGGATGAGGGGAAGGTAAGGAAGCTTTCTAGACCAGAGAGAATTGTTAAGGAAATTGTTTCAGAGTCTATACCTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAAGAATCTCATTGAGAAGTCTGACAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGAGAGAAGATCTGACCTTACCAAGGAGAGTCTCTCAAAGTGCCATAAAGTACAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAGCAAAGTTCACTTACCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGAAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGTAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCATTGGTGCCATGCTACCTGTGGAATTCAGAGGAATCTTATCAAGCCTGGGCCAAGCTTGAAGGGACCTTCAGGAACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCGGAAATGTTTGGTTTCGTTAAAGACGTGTTTGTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCAGGAGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAAAATGATATCTCCTTTGGATGCTTGCAATTACATCATGCAATTTTTCAGCTACGCGGACAGCATGTCAGACTTTCCTGCTTCTGGTAGTTTCTTCAAAGGATTTGTCAGCCTCTCAATCTAA 1917 0.4382 MIGSKDRAADSEGENSRSKLSRHNFEPGKEYPDEKGVEFLRDSEVGGGGGGGGVDGAFHSKPTKVVVGGSSGLQELTLSYLCDNPKLSLAEKEIPGKSLLNSLEKMSHKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESSREKKPKLETLNLSLALPDVSLSLTASNALQNGDQQPVRTKPCRPTTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHGGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRILEGLDEGKVRKLSRPERIVKEIVSESIPVMALTIQELTDDVIASTKEYLKNLIEKSDKKEELVSLQNRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSSKVHLPEMVEIFLYKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFRRSEDRKGKELHVKTDDMLLKLQTKMISPLDACNYIMQFFSYADSMSDFPASGSFFKGFVSLSI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01361 638 MobiDBLite consensus disorder prediction 184 204 - -
Pumo6g01361 638 MobiDBLite consensus disorder prediction 1 58 - -
Pumo6g01361 638 CDD PHD_OBE1_like 478 537 IPR047578 -
Pumo6g01361 638 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 485 505 IPR004082 -
Pumo6g01361 638 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 415 IPR004082 -
Pumo6g01361 638 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 439 460 IPR004082 -
Pumo6g01361 638 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 558 577 IPR004082 -
Pumo6g01361 638 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 361 383 IPR004082 -
Pumo6g01361 638 MobiDBLite consensus disorder prediction 136 158 - -
Pumo6g01361 638 Pfam PHD - plant homeodomain finger protein 448 572 IPR032881 -
Pumo6g01361 638 MobiDBLite consensus disorder prediction 1 41 - -
Pumo6g01361 638 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 105 627 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01361 Pumo-Chr6 18323347 18326953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01361 448 545 PHD Gene Family AT5G57380 28.571 6.98e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01361 - - gmx:100820216 1168.68