Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo6g01360 | ATGATGACTCCAAATTTGAACTTGGAACCAGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCCAATGTATCCTTGCACGAAGCATCTCATGATCTTACAAAGGGAAGCACCACCACCTCCTCCTGTCTAACAAAGGATGAAATTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCAGTGATGGTGAGTTGAAAGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGAGGCTCCTGCTTCAGCATCAGCAACTCCCAGGATTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCACAGGCATTAGGGGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCCAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTCCATGGTTCACCTTTTAGGTCTCTTGGCCTTGAAGCTCACTCTGCAATGCACCGAAGATCCGTGCCGTCCTCAGTACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTAGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGACCAAGGAGCTGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAACAAATGCTAGTTTAGTTCCAATGGTGCCTCCTCCACCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA | 747 | 0.4618 | MMTPNLNLEPENHSEGSSQVASNVSLHEASHDLTKGSTTTSSCLTKDEIDPGSITLDLTLNFNSSDGELKGSSDASSEVGAEAPASASATPRIFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRSVPSSVLRAPDMRAAAKFERNQFGSLVFMEDDDVGFFWPGSFRQVDQGAAGVNVGHAQSSTNASLVPMVPPPPQASASPDLTLKL | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo6g01360 | 248 | SUPERFAMILY | beta-beta-alpha zinc fingers | 92 | 122 | IPR036236 | - | |
Pumo6g01360 | 248 | Gene3D | Classic Zinc Finger | 72 | 140 | - | - | |
Pumo6g01360 | 248 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 17 | 168 | IPR044246 | GO:0009788 | |
Pumo6g01360 | 248 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 96 | 116 | IPR013087 | - | |
Pumo6g01360 | 248 | FunFam | Zinc finger protein 2 | 70 | 140 | - | - | |
Pumo6g01360 | 248 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Pumo6g01360 | 248 | MobiDBLite | consensus disorder prediction | 67 | 86 | - | - | |
Pumo6g01360 | 248 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 94 | 121 | IPR013087 | - | |
Pumo6g01360 | 248 | MobiDBLite | consensus disorder prediction | 226 | 248 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo6g01360 | Pumo-Chr6 | 18302738 | 18308309 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo6g01360 | 88 | 248 | C2H2 Transcription Factor Family | AT1G66140 | 44.149 | 5.57e-40 | 137 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo6g01360 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo6g01360 | - | - | gmx:100775305 | 465.692 |