Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01360 ATGATGACTCCAAATTTGAACTTGGAACCAGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCCAATGTATCCTTGCACGAAGCATCTCATGATCTTACAAAGGGAAGCACCACCACCTCCTCCTGTCTAACAAAGGATGAAATTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCAGTGATGGTGAGTTGAAAGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGAGGCTCCTGCTTCAGCATCAGCAACTCCCAGGATTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCACAGGCATTAGGGGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCCAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTCCATGGTTCACCTTTTAGGTCTCTTGGCCTTGAAGCTCACTCTGCAATGCACCGAAGATCCGTGCCGTCCTCAGTACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTAGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGACCAAGGAGCTGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAACAAATGCTAGTTTAGTTCCAATGGTGCCTCCTCCACCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA 747 0.4618 MMTPNLNLEPENHSEGSSQVASNVSLHEASHDLTKGSTTTSSCLTKDEIDPGSITLDLTLNFNSSDGELKGSSDASSEVGAEAPASASATPRIFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRSVPSSVLRAPDMRAAAKFERNQFGSLVFMEDDDVGFFWPGSFRQVDQGAAGVNVGHAQSSTNASLVPMVPPPPQASASPDLTLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01360 248 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Pumo6g01360 248 Gene3D Classic Zinc Finger 72 140 - -
Pumo6g01360 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 168 IPR044246 GO:0009788
Pumo6g01360 248 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pumo6g01360 248 FunFam Zinc finger protein 2 70 140 - -
Pumo6g01360 248 MobiDBLite consensus disorder prediction 1 22 - -
Pumo6g01360 248 MobiDBLite consensus disorder prediction 67 86 - -
Pumo6g01360 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pumo6g01360 248 MobiDBLite consensus disorder prediction 226 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01360 Pumo-Chr6 18302738 18308309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01360 88 248 C2H2 Transcription Factor Family AT1G66140 44.149 5.57e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g01360 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01360 - - gmx:100775305 465.692