Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01343 ATGGGTCGTGGAAGAATACCCATGGAACTTATTCAGAAGGAGAAAGCCCGTAAGACAACATTTAACAAGAGAAAGAACGGATTAATGAAGAAAGCTTATGAGTTTTCCACTCTTTGTGCGGTTGATGTTGGTGTAATTCTCTATGCTCCCAATTTTCTTGATGAACCCGAAACATGGCCCCAAGACTCAGGAGAGGTAAAACGTGTAATTCAAAAATATCAGAACACCACTAGTGATAGGCGTTCTAACGTATATGATGTGCAAGAGTATTTTAACGATAGGATGAAAACGATTGAAGGTGAAATTTCCAAAGTGCACAAAGAGAAGATCAAGCTCATGTACCCAACCTGGGATGACTCTTACAATACTCTTGGAGAGGAACAATTGAGGATGTTTGTTAGTATTCTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAATATGTTAAAGAGAGATTCAAAGGGAAAGGCAATAGTGGAATCAAACAAAGCTGAGACACTTACTCCCTACATGGCCTCAAATTTAAGTAGTCATCTCAATTTCATGTCTCAAACACAACTTTTCCCTCCTGGTGATAACAACCAAGTAGCATTTTACCCATATCAGCTTAGCCAAAGTTCTCAACCTTCTATGTTTCATTTTGGTCAAAGTTGTACTCAATTGATGGAAAAAAATGCAATGGTGGATTGGGCTAATCAAGTTGGAGGTGTTGCTTGTGATCCCAAAATGGGTGTACTACAAAAGGAGGATGGATCTGAAAAAAACCAAAACTCCTCACCATGCTATTTCACTGGAAATATGCAAACAATGCAGCCACACACGGTTGGTTTGCAAACTCTTCCTTCTCAATTGCAGTACGATGCAACTTTCAAGACAATACCAGATCAACTAGGACAACCACCAGGGTTTGAACTTAATGGTTTTTACGATTCAAATGTGCTTTAA 948 0.3903 MGRGRIPMELIQKEKARKTTFNKRKNGLMKKAYEFSTLCAVDVGVILYAPNFLDEPETWPQDSGEVKRVIQKYQNTTSDRRSNVYDVQEYFNDRMKTIEGEISKVHKEKIKLMYPTWDDSYNTLGEEQLRMFVSILDAKLDACNQRMNMLKRDSKGKAIVESNKAETLTPYMASNLSSHLNFMSQTQLFPPGDNNQVAFYPYQLSQSSQPSMFHFGQSCTQLMEKNAMVDWANQVGGVACDPKMGVLQKEDGSEKNQNSSPCYFTGNMQTMQPHTVGLQTLPSQLQYDATFKTIPDQLGQPPGFELNGFYDSNVL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01343 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Pumo6g01343 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01343 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g01343 315 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Pumo6g01343 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Pumo6g01343 315 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pumo6g01343 315 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Pumo6g01343 315 CDD MADS_SRF_like 2 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo6g01343 315 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01343 Pumo-Chr6 18115851 18116798 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01343 1 202 Type I MADS-box Gene Family AT5G55690 33.971 3.14e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g01343 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01343 - - gmx:102660566 486.108