Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01341 ATGAAGAGGGAGCGCGAGCAGCTTGGTTCCAACGCAGGGACCTCAAGCTGCGGATATTCGAGCGGAAAATCGAACCTTTGGGGGGACGAGGAAGGAGGCATGGACGAGCTTCTTGCGGTGGTGGGTTACAAGGTGAGGTCGTCCGACATGGCTGAAGTGGCGCAGAAGCTGGAGCGTCTCGAGGAAGCCATGGGAAATGTCCAAGATAACCTAACGGACCTTTCAAACGACGCCGTTCATTACAACCCTTCCGACATCTCCAACTGGCTCGAAACCATGCTTTCCAATTTTGTCCCTCTCCCCTCCGAAGAACCGGAAAAGGACTCCGCCTCGTCCGACTACGATCTCAAGGCTATTCCCGGGAAAGCAATCTACGGTGGTGGTGGTGGTAGCGATGCGCCAAACCCTAAGCGCGTGAAAACCGACGAGTCAACGCGCGCGGTGGTGGTGGTTGACTCGCAGGAGAACGGGATCCGCCTCGTGCACAGCCTCATGGCGTGCGCGGAGGCCTGTGGAGAGCAACAACCTCGCCGTGGCGGAGGCGCTGGTGAAGCAGATCGGGTTCCTCGCGGTGTCGCAGAAGTCTTCCCTCTGCAACACTCGCTCTCCGATTCTCTCCAGATTCACTTCTACGAAACCTGTCCATACCTCAAGTTCGCGCACTTCACTGCGAATCAAGCTATCCTCGAAGCGTTCCAAGGAAAAAACCGCGTCCACGTCATCGATTTCGGAATCAACCAGGGGATGCAGTGGCCGGCGCTGATGCAAGCCCTAGCGCTCCGTTCCGGCGGTCCTCCCGCCTTCCGGCTCACCGGAATCGGACCGCCGGCGGCGGACAACTCCGACCACCTCCAGGAGGTCGGATGGAAGCTCGCGCAGTTAGCGGAAACCATTGGCGTGAAGTTCGAGTACCGCGGCTTCGTTGCAAACAGCCTCGCCGATCTCGACGCCTCCATGCTCGACCTGAGGGAAGACGAGTCCGTCGCGGTCAACTCCGTCTTCGAGTTTCACAAGCTCCTCGCCCGCCCCGGCGCCGTCGAGAAGGTTCTCTCCGTCGTCCGCCAGATTCGCCCGGAGATTCTCACCGTCGTCGAGCAAGAAGCGAACCACAACGGACTCTCCTTTCTGGACCGGTTCACTGAGTCACTGCACTATTATTCCACTCTATTCGACTCGCTGGAGGGTTCTCCTGTGAACCCTAACGATAAGGCGATGTCGGAGGTTTACTTAGGGAAGCAAATCTGTAACGTTGTGGCGTACGAGGGAATGGACCGCGTGGAGCGGCACGAGACGGCTGAACCAGTGGCGGAACCGGTTCGCTTCGACCGGGTTTTCTCCGGTTCATTTGGGTTCGAACGCGTTTAA 1365 0.5846 MKREREQLGSNAGTSSCGYSSGKSNLWGDEEGGMDELLAVVGYKVRSSDMAEVAQKLERLEEAMGNVQDNLTDLSNDAVHYNPSDISNWLETMLSNFVPLPSEEPEKDSASSDYDLKAIPGKAIYGGGGGSDAPNPKRVKTDESTRAVVVVDSQENGIRLVHSLMACAEACGEQQPRRGGGAGEADRVPRGVAEVFPLQHSLSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFGINQGMQWPALMQALALRSGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAETIGVKFEYRGFVANSLADLDASMLDLREDESVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEANHNGLSFLDRFTESLHYYSTLFDSLEGSPVNPNDKAMSEVYLGKQICNVVAYEGMDRVERHETAEPVAEPVRFDRVFSGSFGFERV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01341 454 Gene3D - 33 97 IPR038088 -
Pumo6g01341 454 Coils Coil 50 77 - -
Pumo6g01341 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 206 432 IPR005202 -
Pumo6g01341 454 ProSiteProfiles GRAS family profile. 151 454 IPR005202 -
Pumo6g01341 454 FunFam DELLA protein GAI 33 97 - -
Pumo6g01341 454 Pfam Transcriptional regulator DELLA protein N terminal 35 100 IPR021914 -
Pumo6g01341 454 SMART DELLA_2 35 107 - -
Pumo6g01341 454 MobiDBLite consensus disorder prediction 1 28 - -
Pumo6g01341 454 Pfam GRAS domain family 206 433 IPR005202 -
Pumo6g01341 454 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pumo6g01341 454 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01341 Pumo-Chr6 18030997 18032423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01341 29 431 GRAS Transcription Factor Family AT1G14920 61.369 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo6g01341 GRAS 3.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01341 K14494 - gmx:547718 726.087