Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01336 ATGAGGAAGAATTGCAACTTGGAACTTCGCCTTTTCCCTCCTTCCCTCTCCGATCTTCGCCCCATGATGGAAGCAGAAGTGAGTGAGAGCCCACAACAACAGGACCCCCACCATCAACAGCAACAGCAACCACAACATCCGTTGACCATTTTCTATGATGGCAAGATTTCTGTTTCGGATGTCACAGAGCTTCAGGCCAGATCCATATTAATGCTAGCAAATAAGGAGATTGAGAAAAGAGTGATGACACCAACAGGGTCAGAACCATCTTCACCAATACTGCAATCACCTCATAACATGTATAGCCCCAGCACTGGACTTTCCATGAAGAGATCACTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGTGTCCAAGAAACATCCCCATACCATCACTAA 399 0.4637 MRKNCNLELRLFPPSLSDLRPMMEAEVSESPQQQDPHHQQQQQPQHPLTIFYDGKISVSDVTELQARSILMLANKEIEKRVMTPTGSEPSSPILQSPHNMYSPSTGLSMKRSLQRFLQKRKNRVQETSPYHH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01336 132 SMART tify_2 41 75 IPR010399 -
Pumo6g01336 132 MobiDBLite consensus disorder prediction 82 132 - -
Pumo6g01336 132 MobiDBLite consensus disorder prediction 84 112 - -
Pumo6g01336 132 ProSiteProfiles Tify domain profile. 41 75 IPR010399 -
Pumo6g01336 132 MobiDBLite consensus disorder prediction 27 47 - -
Pumo6g01336 132 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 130 IPR040390 -
Pumo6g01336 132 Pfam Jas motif 110 130 IPR018467 -
Pumo6g01336 132 Pfam tify domain 43 74 IPR010399 -
Pumo6g01336 132 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01336 Pumo-Chr6 17865819 17872157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01336 1 131 Tify Gene Family AT1G30135 44.853 1.88e-27 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo6g01336 tify 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01336 - - gmx:100305565 227.639