Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01327 ATGGAGGAGGATGAGATTCAAGCACAGGCGTGTAAGTTGCCACGGGTTGGAAACGGGAGGAACGAGGATGTTAGAGAGGTGAGAAGAAGAGGCAGTGATGGAGAGAGCACGAACAGGTTCCACAGCTGGCACCACTCTTCTTCTTCTTCTTCGAGGATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACTTCGAAGGGGTTACGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCCATTCAGTTCTATGACCTCCAAGATCGCTTGGGCTATGACCAACCTAGCAAGGCAGTGGAGTGGCTCATCAAATCTGCTTCTGATGCCATTTCTGAACTACCTTCTTTGAACAACACTTTCTCTGACACACCAAAAAGTGATGAGAAGAGAGCATGTGCTGATGCCGCTATGGGGGTGGATGGTGAGAATGGAAATGGGAATAACAATAACAATAACCAGAGCCAGAACATGTCTTTGTCTAAGTCTGCTTGTAGTAGCACTTCTGAGACAAGCAAGGGTTCTGGCTTGTCCCTCTCCAGGTCTGACATTCGTGTGAAGGCTAGAGAGAGGGCAAGGGAGAGAACAGCAAAGGAAAAGGAGAAAGAGAAAGAGAACAACAACAATGAGTCTCATCATCATCATCATCACAATGTTGTTCCTCCTCCTCACCACCACAATGTGAACCCGGTTTCACAAACAGCTTCTTTCACTGAGCTTCTCACTGGTGGGATCAGCAATAATAATGCAGTTCCCACCACAGCCAGTCCCAAAGGGTGTGATGAGCCTAACAACATGATGTTCAACAAAGCAGGTAGACAGCAATGGTGTTCATCACCACCTATGGACTACTTTCTGGGGCCTTCCTCTTCTAGAACAACAACACCACCAACAACCCATAATCACAATCACCTTCATCAATATTCTTCTTCTAGTGGGTTCTCATTGGCACAAATCCAACTGGGACATTCTCTTCCTGAGGCAATGAGTCATGTTTCATCATTTAACAATAATGTGAGTGGTGAGAACCACAACCAAAACCAAAACCACTCATCAGATCCTCATCAGCTGCAACAACACTTCTCATTCATACCGGATCATCTCATGTCAGCTGTGGTTACTTCTTCTGCTTCTTCTTCTCATCATCATCATCATCAGCCCAGCGGGAACGACTACAATCTGAACTTCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGTTGCCTCACCTGCAGAGGTTTTCGCCTTTAGACGGATCCACTGTACCCTTCTTCATTGGAGCTGCTCCTGCTGCAGCAGTTGCTCCTGCCATGGAGAACAACAACAACAACAACAACAACCATCACCACCATCAGTTCTCTTCTGTTTTTGATGGCAGCCGCTTGCAACTCTACTATGCAGATGGATGCCGCCATTCTGACCAGAAGGGGAAAGCCAAGAACTGA 1494 0.4746 MEEDEIQAQACKLPRVGNGRNEDVREVRRRGSDGESTNRFHSWHHSSSSSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNTFSDTPKSDEKRACADAAMGVDGENGNGNNNNNNQSQNMSLSKSACSSTSETSKGSGLSLSRSDIRVKARERARERTAKEKEKEKENNNNESHHHHHHNVVPPPHHHNVNPVSQTASFTELLTGGISNNNAVPTTASPKGCDEPNNMMFNKAGRQQWCSSPPMDYFLGPSSSRTTTPPTTHNHNHLHQYSSSSGFSLAQIQLGHSLPEAMSHVSSFNNNVSGENHNQNQNHSSDPHQLQQHFSFIPDHLMSAVVTSSASSSHHHHHQPSGNDYNLNFTMSSGLAGYNRGTLQSNSPSLLPHLQRFSPLDGSTVPFFIGAAPAAAVAPAMENNNNNNNNHHHHQFSSVFDGSRLQLYYADGCRHSDQKGKAKN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01327 497 MobiDBLite consensus disorder prediction 1 53 - -
Pumo6g01327 497 MobiDBLite consensus disorder prediction 189 222 - -
Pumo6g01327 497 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 415 IPR005333 GO:0003700
Pumo6g01327 497 MobiDBLite consensus disorder prediction 18 40 - -
Pumo6g01327 497 Pfam TCP family transcription factor 61 208 IPR017887 -
Pumo6g01327 497 Coils Coil 192 212 - -
Pumo6g01327 497 MobiDBLite consensus disorder prediction 149 185 - -
Pumo6g01327 497 ProSiteProfiles R domain profile. 188 206 IPR017888 -
Pumo6g01327 497 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Pumo6g01327 497 MobiDBLite consensus disorder prediction 144 232 - -
Pumo6g01327 497 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01327 Pumo-Chr6 17722023 17729256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01327 35 497 TCP Transcription Factor Family AT4G18390 41.176 1.00e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo6g01327 TCP 8.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01327 - - gmx:100816799 536.954