Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01314 ATGGAGGAAGAAAAGACACAAAGTGTGCCGGTGCTGCCATGGATGCGCAACCCTGTCGACGTCACTCACTGTGAAGAACTCTCCATCCGTAGGGTTCCTTTCCTGGACAGCAGGTTAAAGTCGGTACTGGAGAACATGGGAATCTCGAGGCTCTTCCCGGTTCAAGTGGCACTTTGGCAAGAAACTGTTGGACCAGGTGACTTTGAACGAGACCTTTACGTAAACTCGCCCACCGGAAGTGGCAAAACTTTGGCCTATGCTCTTCCGATCGTGCAAAAGTTGTTGTCCACTGGCACCTTTAACTGCCTTCGTGCTCTGATTGTAGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACACGTTTTCGATGCCCTTGCATCGCCACTGGGTCTGCGCGTTGGCTTGGCTGTGGGTCAATCTAAAGTTGCCAATGGCATTTCTAACCTCCTTTATCTACCGGGACAAGAGGACGGTCCAGACCCGGGATTTTTGTCTCCGTTCTGGCTCCAAAGCAAGGTGGATATATTGGTGGCAACCCCAGGAAGGCTTGTGGACCATGTCAAGAATGTGTCTACAGGTTTCACACTCAAACATCTTCATTATCTCGTGGTCGACGAAGCAGATCGATTGCTCCGAGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATCGAACGATGACATTGATGATAATGATGATGATGATAATGTTTTTCAATTGGGGTTCCCTTATTCTCCCTGGAAAAGAAGAAGATGTAGTGGAGTTGAGAGGGGGTCCAAGCCTCACTCTAGGCTCGTAAAGATGGTTTTATCTGCGACGTTAACTCGGGACCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGATCTGTGAAAGAAAGGTCAAATCCTTGTATTTGGCTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCATCGCATCGTCTCTGCAAATTACTGAATTGTTTTGAAGACCTGCAAATTGATATCAAGGAGTATTCTAGTCTTCAACATCAACGGGTAAGAAGCAAGAGACTGGATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATCACATGCCCAAATACAGAAAGACTTATGTTCATCGAGCTGGTAGGACTGCGAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAAATGAGGTTGGAAGATTTGAGAAGTTGATGAAAAAGTCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCATCCAGTTTGATTGAAGCACTTGATAGTAGCTACCAATCAGGTAAATATCTTAAATTCCATTTTAGGTGTATTTGCCTTTGTAGATAG 1479 0.455 MEEEKTQSVPVLPWMRNPVDVTHCEELSIRRVPFLDSRLKSVLENMGISRLFPVQVALWQETVGPGDFERDLYVNSPTGSGKTLAYALPIVQKLLSTGTFNCLRALIVVPTRDLALQVKHVFDALASPLGLRVGLAVGQSKVANGISNLLYLPGQEDGPDPGFLSPFWLQSKVDILVATPGRLVDHVKNVSTGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSNDDIDDNDDDDNVFQLGFPYSPWKRRRCSGVERGSKPHSRLVKMVLSATLTRDPGRLVQLNLHHPLFLSAGKMRYRLPENLESYKLICERKVKSLYLAALLKSLGEEKCIVFTRSVDSSHRLCKLLNCFEDLQIDIKEYSSLQHQRVRSKRLDEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYHMPKYRKTYVHRAGRTARAGQTGRCFTLMSKNEVGRFEKLMKKSEASACLEHTVPSSLIEALDSSYQSGKYLKFHFRCICLCR 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01314 492 SMART ultradead3 47 309 IPR014001 -
Pumo6g01314 492 CDD DEADc_DDX51 39 294 - -
Pumo6g01314 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 449 IPR027417 -
Pumo6g01314 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 293 IPR014001 -
Pumo6g01314 492 SMART helicmild6 345 429 IPR001650 -
Pumo6g01314 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 471 IPR001650 -
Pumo6g01314 492 PANTHER RNA HELICASE 35 451 - -
Pumo6g01314 492 Gene3D - 304 485 IPR027417 -
Pumo6g01314 492 Gene3D - 15 296 IPR027417 -
Pumo6g01314 492 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Pumo6g01314 492 Pfam Helicase conserved C-terminal domain 320 429 IPR001650 -
Pumo6g01314 492 CDD SF2_C_DEAD 306 437 - -
Pumo6g01314 492 Pfam DEAD/DEAH box helicase 55 279 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01314 Pumo-Chr6 17497703 17502064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01314 57 442 Eukaryotic Initiation Factors Gene Family AT3G13920 24.352 2.00e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01314 K14807 - gmx:100789424 661.759