Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01305 ATGTCTCAGTTTGTTTCAGCACCTCAGTCTCAATCACCACCCATGCAAGCTATCTCTTCACTGGGCCATCAGCAAAGCTTTTCTGATTCAAATGGGAACCCTGCGACTACTGCTATTGTTTCTCCCCTGCATAGTATATTGGGTTCATTTCCGCAGGATGACACATCTCACCTTCTCAACCTTCCTAGATCCACCTCTTGGGTTCCTGTTCAACATTCAACTGCATGGCCACCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAGGGGAGCAGTTAGGGCAGCCACAGAGTACCATGGCTCAAAATGGCATTACATTGCCACCCTTTCCTGGTAGGGAGTGTACAATAGAAGGAAGCACTGATCCACAAAATCATCTATTGTTTGGTGTCAATATAGAACCCTCATCACTTCTAATGCATAATGGGATGTCAAGTCTTAAGGGAGTCAGCAGCAACAGTGACTCACCCACCATACCTTTTCAATCTTCTAATTACCTGAACACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACACAATATTGGTGAATCGGGCTTCCTGCAAACTCCAGAAAATGGGGGGCAAGGAAACCCACCTAATAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCATTGGATATTACTAAATTCACCAGCTACCCTGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTTCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCGGTCCCAATTCAGAGGCTCTCTAACGGCGTCTGTGACGACTATGCAGGCCGTGAGGACCCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAAACTACTGA 1044 0.4703 MSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPATTAIVSPLHSILGSFPQDDTSHLLNLPRSTSWVPVQHSTAWPPSKRVAVDPLLSSGASQCVLPQGEQLGQPQSTMAQNGITLPPFPGRECTIEGSTDPQNHLLFGVNIEPSSLLMHNGMSSLKGVSSNSDSPTIPFQSSNYLNTTGTDSSLNHGMTHNIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFTSYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGVCDDYAGREDPRNLSTGITTVGSLNY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01305 347 Pfam AUX/IAA family 211 299 IPR033389 -
Pumo6g01305 347 Gene3D - 211 303 - -
Pumo6g01305 347 FunFam Auxin response factor 209 303 - -
Pumo6g01305 347 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 75 303 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g01305 347 SUPERFAMILY CAD & PB1 domains 210 290 - -
Pumo6g01305 347 MobiDBLite consensus disorder prediction 1 34 - -
Pumo6g01305 347 ProSiteProfiles PB1 domain profile. 214 298 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01305 Pumo-Chr6 17375827 17378013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01305 1 347 B3 DNA Binding Superfamily AT1G30330 60.705 1.49e-121 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01305 - - gmx:100777789 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01305 6 17375827 17378013 Pumo6g01305 6 17375827 17378013 ECH