Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01304 ATGCAGATACTGAGACATGATGAAGTATATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAGAAGGAGGCATACCTTCCAGCAGATTTGGGCACACCGAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACTAGCACTCATGGGGGATTCTCTGTTCCTCGCAGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTTGTCAAGAGTTAATTGCAAGAGATTTGCATGGTAATGAGTGGAAATTCAGACATATCTTCCGTGGCCAGCCCAAAAGGCATCTTCTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCTCAACCTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCTTTAACGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTGTGCGTCGATACATGGGCACAATAACTGGCATCAGTGACTTGGATTCTGTTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTCGAGTGTCTTTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAGAGACCATGGCCTCCAGGACTGCCTTCTTTCCATGGTATGCTTCCTGCCACATTTGAGCTGAAAATATTCATGAACTTTCTGATGACCTGA 960 0.45 MQILRHDEVYAQMTLQPLNPQEQKEAYLPADLGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMLPATFELKIFMNFLMT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01304 319 SMART B3_2 43 145 IPR003340 GO:0003677
Pumo6g01304 319 FunFam Auxin response factor 207 279 - -
Pumo6g01304 319 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 299 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g01304 319 FunFam Auxin response factor 41 145 - -
Pumo6g01304 319 Pfam B3 DNA binding domain 43 144 IPR003340 GO:0003677
Pumo6g01304 319 Pfam Auxin response factor 169 252 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo6g01304 319 Gene3D - 41 144 IPR015300 -
Pumo6g01304 319 ProSiteProfiles B3 DNA-binding domain profile. 43 145 IPR003340 GO:0003677
Pumo6g01304 319 CDD B3_DNA 42 143 IPR003340 GO:0003677
Pumo6g01304 319 SUPERFAMILY DNA-binding pseudobarrel domain 28 172 IPR015300 -
Pumo6g01304 319 Gene3D - 207 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01304 Pumo-Chr6 17370920 17375522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01304 7 303 B3 DNA Binding Superfamily AT1G30330 93.603 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo6g01304 B3 3e-23 CL0405