Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01296 ATGAAGCTTGCGCCTAGGGTGGATAGCGCGGGAGCAATGCGCTGCAAAAGTAGAGGTCAAAGGCTGAAGGTCGAAGGAATTATGGGTCGTCAAAAAATTGAGATTGAACTGATGAAGGACCTCAAGATAAGGCAGGTCGCATTCTCAAAGCGTCGAACATGTTTGTTTAAGAAAGCTAACGAGTTAACCATCTTGTGCGGTGCAGAGATTGCTATTGTTGTGTTCTCCCCTGGAGACAGGCCTTACTCATTTGGGCACCCGAGGGTTGATGTTGTTGCAGCCAAGCATCTTCAGCAAGAACCTACATCATCTGAGGCCCAAAACGCCCCTTCTTCTGAGATTATTAAAATTGATGAGCATAATCAAGAACTTGATGATATTCTGAAGAAAAAGAATTATGAGGAAAAGAAAGGTGCAGAGCATGATGAGGGCATTAAAAAGAAAATAAGGACACAACGCTTTGAGCTTGAAAAAACACTTGATGCATTTGAAGAGCTCAGATTAAGAGTGAAAAGTGACCTTAATGTACTTGAGGCAGCCGAAACTATGTGCTCCTTTCACAAAATGTGA 570 0.4281 MKLAPRVDSAGAMRCKSRGQRLKVEGIMGRQKIEIELMKDLKIRQVAFSKRRTCLFKKANELTILCGAEIAIVVFSPGDRPYSFGHPRVDVVAAKHLQQEPTSSEAQNAPSSEIIKIDEHNQELDDILKKKNYEEKKGAEHDEGIKKKIRTQRFELEKTLDAFEELRLRVKSDLNVLEAAETMCSFHKM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01296 189 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 SUPERFAMILY SRF-like 28 100 IPR036879 GO:0003677|GO:0046983
Pumo6g01296 189 Coils Coil 117 137 - -
Pumo6g01296 189 Gene3D - 42 112 IPR036879 GO:0003677|GO:0046983
Pumo6g01296 189 PANTHER MADS BOX PROTEIN 30 169 - -
Pumo6g01296 189 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 FunFam Agamous-like MADS-box protein AGL62 40 106 - -
Pumo6g01296 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 84 IPR002100 GO:0003677|GO:0046983
Pumo6g01296 189 CDD MADS 29 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01296 Pumo-Chr6 17232352 17235102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01296 28 183 Type I MADS-box Gene Family AT2G34440 36.747 1.15e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g01296 SRF-TF 1.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01296 - - gmx:100791127 159.844