Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01285 ATGGCCGTTTTGGACACTGTGTTGGGAACGGTCAATGTGGCATTCTTGTATGCCATTTTGATATGGGTTTTGGTGGATAGTTTGAGACAAAGCACGCGTGGTAGCCATGTTCGTGTTGTACATTTCAAACGAGGACCAATGGTTTTCTCTATAGTCACTGTTCTATGCTGTGCTGCTATTTCTGTTATGAACATGGCTTTTGCTTTTTACCAATACAGTTCCAGGAGAATCATAGGATTTAACTCTGTTTCCTTGGCTCTAACTTGGGTTTTGGCCACTATGGTTTCGTTTTATTCAATGAGGACTAGAGTGAGGGAGAATAAAAGGTCCCCTCTTGTTCTGATCCTATGGTGGGTTTTTGCTTGTGTCATAGATGCACTCTTGCTGTCTTTAAAGCTGGTGAAAAATTTTGATTCAATCAACTTGTGGTTTTTCTTGTCAGAGGATAACGTAGTTGATTCGGTTTCCTTGCCTTTGTTGGTACTTCTTTGTTTCAATGTGTGTGCAAGGGAGAACAGTGATATGGAACAACCTTTACTTCAAAAAGAGGAGGAATCTTCTATGGAGGAAGATGAAGAGGCCTTTACAAATGCAAGTATATGCAGCAAACTTGCATTCCGATGGTTGAATCCCATTTTTAAAACAGGTCGAATTAAAAAGCTTGAGCTTGGTCATATTCCTCCTGTTCCTCCTTCTGAAACAGCAGAAAATGCTTCTTCTGTGTTGGAAGAATCACTTCGCAAACAAAAACTTGAAGGGGGTTCCTTGACAAAAGCTATTGCCCATTCTATATGGAAGTCCTTGGCCTTAAATGCAGTTTTAGCTGGTGTTAACACTGGTGCCTCCTATATAGGTCCCTTGTTGATCACAAATTTTGTGAATTTTTTATTGGGAAATAATGGTGATTCAAGCATCCAATATGGATTGGTTCTTGCATTTATTTTCTTCCTTGCAAAGACTGTGGAGTCACTGAGTCAAAGACAATGGTACTTTGGTGCTCAACGAATTGGAGTCCGGGTGCGTGCAGCTCTTACATCTCTAATTTATAGCAAGTCCATATTGATGAAGTATGCTGGACCAACACAAGGTAAAATCATCAATTTGATCAATGTGGATGTTGAAAGAATTGGGGACTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATCTTATACATAAATCTGGGTTATACTCCTTCTTTTGCTGCATTTGGTGTCACCATTTTGGTCATGGTGTGTAACACACCTTTGGCCAATAAGCAAGAAGGTTTGCACTCCAAGATCATGGAAGCTAAGGATTCAAGAATTAAAGTGACATCAGAGACCATGAAGAACATCAGAATTTTAAAATTGCATTCATGGGAAACCTCATTCTTGCAGAAACTCCTCCAACTTAGGGAAACTGAGAGGAGGTGGCTGCAGAAATACCTCTATACATGCTCAGCAGTAGCCACACTATTCTGGACATCTCCAACTTTAGTTTCTGTTGTCACCTTTGGTGCTTGTATACTGGTGAAAACAGAACTAACGGCAGCTACAGTACTCTCAGCTTTAGCAACTTTTCGTATTTTGCAAGAACCAATCTACAACTTACCAGAGCTTATCTCCATGATCATTCAAACAAAAGTCTCTGTTGATCGAATCCAGGAGTTCATTAAGGAAGATGATCAAAACCAATTCATAAATAGGCATACTTCAAAAATTTCAGCAGTTGCTATTGAAATTAAGCCAGGCGAATATGCATGGGAAACAAATGATCAAACCCACAAGAAACCAACAATTCAAATTACAGGAAAGTTGGTGATAAATAAAGGTCAGAAGGTAGCAGTTTGTGGGTCAGTGGGGTCTGGCAAATCAAGCTTGCTATGCTGTATGCTTGGGGAGATTCCATTAGTTTCTGGGGCAGTAGCCAAAGTCTACGGGACTAGAAGTTATGTACCCCAAAGTCCATGGATTCAGTCTGGAACTGTAAGAGAGAATATATTGTTTGGCAAGCAAATGAACAAGGACTTTTATGAAGATGTTTTGGATGGCTGTGCTTTGCACCAGGACATCAACATGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGGGGCATAAACTTGAGTGGTGGGCAGAAACAGCGGATTCAATTGGCACGGGCCGTTTACAATGATTCTGATATTTATTTCTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAACTCATTTGTTTAAGAAATGTGTCATGAAACTTTTATATGATAAAACGGTGGTTTATGCTACACATCAACTGGAATTCTTGGAAGCTGCAGACCTCATTTTGGTAATGAAAGATGGAAAAATAGTGGAGTCAGGAAGCTATAAAGATCTTATAGCATGTCCCAACTCTGAACTTGTTCAACAAATGGCTGCTCACCAAGAAACAGTACACCAAATAAATCCATGCCAAGAAGATGATTCTGCTAGCTGCAGACCCTGCCAAAAAAATCAAATTGAAGTTGAAGAAAATATTCAAGAGATCATGGAAGATTGGAGGAGAAACAAAGAAGAGGAAGCAGAGACGGGTCGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCTGCTTATAAAGGAGCACTTGTTCCGGTTATTCTTCTCTGCCAAATTCTCTTTCAAGTAATGCAGATGGGAAGCAATTATTGGATTTCATGGGCCACGGAGCAGAGGGGTAGGGTCAACAACAAGCAGCTTATGGGAACATTTGTTGTTCTATCTTGTGGTGGCACCATCTTCATACTGGGAAGGACTGTTTTAATGGCAGCTGTTGCTGTGGAAACTGCTCAACGCCTTTTTCATGGAATGATCACATCAGTTTTCAGGGCACCTGTTTCATTTTTTGACACCACACCTTCAAGCAGAATTATGAGTAGGTCATCAACGGATCAAAGTACAGTAGACACGGACATACCATACAGATTAGCTGGACTAGTATTTGCACTAATCCAGTTATTGAGTATCATTGTGCTAATGTCCCAAGTTGCCTGGCAAGTCATTCTCCTCTTTTTTGTGGTGCTTGCTATTTCCATTTGGTATCAGGCTTATTACATCACAACAGCCAGGGAATTAGCCAGGATGGTTGGGATTCGAAAGGCACCAATCTTGCATCATTTCTCAGAATCAATTGCTGGGGCCGCCACAATCCGCTGTTTCAATCAAGAGCAACTATTCTTGAACAAAGTTAAGGCTCTAATTGATGATTATTCTCGGGTAGCCTTTTACAATTTTGGCACCATGGAATGGTTGTCTGTCCGAATCAATTTCCTCTTCAATTTGGTCTTCTATTTTGTTCTCGTCATCTTGGTTACTCTTCCAAGGTCTACAATTGATCCAAGCTTGGCGGGTCTGGTAGCTACCTATGGTTTGAACTTGAATGTCCTTCAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATATCAGTTGAGAGAATATTGCAATTCTCTCGCCTACCAAGTGAAGCGCCATTAATTATTGAAGATTGCAGGCCTGAACCAGAGTGGCCAAAGGAGGGAAAAGTTGAACTACATAACCTTCATATACAATATGATCCTGCTGCTCCTAAGGTCCTCAAAGGTGTGACTTGTGTCTTCCCAGGACAAAAGAAAATTGGTATAGTAGGCAGGACAGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGATCTATACTTATTGATGGTGTAGACATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCTCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCTCTTGAACAACATGCAGATCAAGAACTTTGGGAGGTTAGCATTAGCATTCTGATGCTTTTCCACCCCAATACTGTTATTGATATGAAATATTCTTTCACTGATGTAGTGGCCGAGAATGGAGAGAATTGGAGTGTCGGACAAAGGCAGCTTGTTTGCCTTGCTAGGCTACTACTGAAGAAAAGAAGAATTTTGGTCCTAGATGAGGCAACTGCATCCATTGACACTGCCACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGTACAGTCATTACAGTAGCACATAGAATTCCTACAGTTATTGATAATGATCGGGTTTTGGTCCTTGATGAAGGGACAATTGTAGAGTATGATGAGCCGGCTCAATTGCTGCAGAACAATTCTTCTTCATTCTCAAAGTTAGTCTCAGAATTTTTGAGGAGATCATCCCAAAGTGTTAACATAGGTGTCTCCTATACAGAGATCATCAAGGATTGGAAGAGAAACAAAGAAGAGGAAGTGGAGACGGGTCGAGTGAAATGGAGTATTCACTCAACCATTGTCACATCTGCTTATAAAGGAGCACTTGTTCCGGTTATTCTTCTCTGCCAAATTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCTTGGGCCACAGGGTCAACAACAAGCAGCTCATGGGAACATTTGTTCTTCTTTCTTGTGGTGGCACCATCTTCATGCTGGGAAGAATAG 4617 0.4098 MAVLDTVLGTVNVAFLYAILIWVLVDSLRQSTRGSHVRVVHFKRGPMVFSIVTVLCCAAISVMNMAFAFYQYSSRRIIGFNSVSLALTWVLATMVSFYSMRTRVRENKRSPLVLILWWVFACVIDALLLSLKLVKNFDSINLWFFLSEDNVVDSVSLPLLVLLCFNVCARENSDMEQPLLQKEEESSMEEDEEAFTNASICSKLAFRWLNPIFKTGRIKKLELGHIPPVPPSETAENASSVLEESLRKQKLEGGSLTKAIAHSIWKSLALNAVLAGVNTGASYIGPLLITNFVNFLLGNNGDSSIQYGLVLAFIFFLAKTVESLSQRQWYFGAQRIGVRVRAALTSLIYSKSILMKYAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGYTPSFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFLQKLLQLRETERRWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMIIQTKVSVDRIQEFIKEDDQNQFINRHTSKISAVAIEIKPGEYAWETNDQTHKKPTIQITGKLVINKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSGAVAKVYGTRSYVPQSPWIQSGTVRENILFGKQMNKDFYEDVLDGCALHQDINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFFDDPFSAVDAHTGTHLFKKCVMKLLYDKTVVYATHQLEFLEAADLILVMKDGKIVESGSYKDLIACPNSELVQQMAAHQETVHQINPCQEDDSASCRPCQKNQIEVEENIQEIMEDWRRNKEEEAETGRVKWSVYSTFVTSAYKGALVPVILLCQILFQVMQMGSNYWISWATEQRGRVNNKQLMGTFVVLSCGGTIFILGRTVLMAAVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRIMSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQVILLFFVVLAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQLFLNKVKALIDDYSRVAFYNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSRLPSEAPLIIEDCRPEPEWPKEGKVELHNLHIQYDPAAPKVLKGVTCVFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVSISILMLFHPNTVIDMKYSFTDVVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDRVLVLDEGTIVEYDEPAQLLQNNSSSFSKLVSEFLRRSSQSVNIGVSYTEIIKDWKRNKEEEVETGRVKWSIHSTIVTSAYKGALVPVILLCQILFQVMQMGSNYWISWATGSTTSSSWEHLFFFLVVAPSSCWEE 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01285 1538 FunFam Multidrug resistance-associated protein member 4 1181 1436 - -
Pumo6g01285 1538 CDD ABC_6TM_ABCC_D2 882 1172 IPR044726 GO:0140359
Pumo6g01285 1538 ProSitePatterns ABC transporters family signature. 712 726 IPR017871 GO:0005524|GO:0016887
Pumo6g01285 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1197 1434 IPR003439 GO:0005524
Pumo6g01285 1538 Gene3D ABC transporter type 1, transmembrane domain 255 567 IPR036640 GO:0005524|GO:0016020
Pumo6g01285 1538 Gene3D ABC transporter type 1, transmembrane domain 847 1178 IPR036640 GO:0005524|GO:0016020
Pumo6g01285 1538 Pfam ABC transporter 1214 1365 IPR003439 GO:0005524
Pumo6g01285 1538 Gene3D - 1180 1436 IPR027417 -
Pumo6g01285 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 584 810 IPR003439 GO:0005524
Pumo6g01285 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 800 IPR027417 -
Pumo6g01285 1538 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 196 1434 - -
Pumo6g01285 1538 CDD ABC_6TM_ABCC_D1 270 557 IPR044746 GO:0140359
Pumo6g01285 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 269 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g01285 1538 SUPERFAMILY ABC transporter transmembrane region 262 562 IPR036640 GO:0005524|GO:0016020
Pumo6g01285 1538 SMART AAA_5 1223 1417 IPR003593 GO:0016887
Pumo6g01285 1538 SMART AAA_5 613 787 IPR003593 GO:0016887
Pumo6g01285 1538 FunFam ABC transporter C family member 5 846 1178 - -
Pumo6g01285 1538 Pfam ABC transporter 609 739 IPR003439 GO:0005524
Pumo6g01285 1538 CDD ABCC_MRP_domain1 582 787 - -
Pumo6g01285 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 884 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g01285 1538 SUPERFAMILY ABC transporter transmembrane region 884 1177 IPR036640 GO:0005524|GO:0016020
Pumo6g01285 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1189 1426 IPR027417 -
Pumo6g01285 1538 FunFam Multidrug resistance-associated protein 4 567 827 - -
Pumo6g01285 1538 CDD ABCC_MRP_domain2 1195 1418 - -
Pumo6g01285 1538 Pfam ABC transporter transmembrane region 270 536 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g01285 1538 Pfam ABC transporter transmembrane region 886 1124 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g01285 1538 FunFam ABC transporter C family member 10 252 565 - -
Pumo6g01285 1538 Gene3D - 605 836 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01285 Pumo-Chr6 17031827 17039468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01285 582 832 Calmodulin-binding Proteins AT2G36910 26.966 8.70e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01285 - - gmx:100809063 2543.07