Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01280 ATGGAGTCCAATTCAGACACCGACGGATCTCACATCTCTGCAACTCCACCAAGAAAATCAACTCCATCACCACCACCACCACAACCACCTCTCGTCGTTTCAAACAAATCCCGAATCAGAATCAAACCTTCAAAATCAAAATCAAAACCAGTTCCTTCCGGACCCTCCAAAACCCGCTCCAAACCCGACCCGATCTATGAAACTCCTCTCTCCCTCCCCACCGATCTCCCATTCCAAATTCGGCGACCTTCCGACGCGCCGTCAGTTTCCCACTCCATCGAAGCCCTCCCCGCCGGCTACTTCTCCTCCTTCCACTCCGCTTCCTTCTCGAAGATTCGTAGACCTCTCCTCAATCTAGAACCTTCCGAAACCGAACAACCGGTTCCTACTCCAGCCGCGTCTCATTCACGCGCCGAGAGTGCCGACTCGAGGAAGCGCGGAAAGAGCCAGCTTCCCAACCTGATCGGCGCCAGCGCGCCGATGCCGAGCGCGAAGCCGCGAACATGCGGCGCCGGCGATGGAGGGAACTTCGTGAAGCTGAACATGACTGGCAAGAGAAAGAAGTTCCTCAACAAGAGAGGGAAATTTAGCGGGAAAAGGTACAAGAGAGGGAGATTCAAATCGCAGCATGAAAAGGAGGAGGAGCAAGAGGAGGCAATTGGAGAGTTGAAGAAGAAAGGGGGCTGCAAGAGGAGGGAGATTGATTGCGACGCGGTGGAAGAGGCTGCGGCCGCGGCCGGCGACGAGCCTTCGGAGGAGAATTTGGTGAAGTTGTTGAGATTGGTTTATGGTTATGATTGCTTTCGAGATGGGCAGGTTGAGGCTATCAAGATGGTTCTTGCTGGGAAGTCCAGTGTGGTTGTTTTGCCGACCGGCGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATTTTGCCTGGAGTTACACTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGTTAAGGCAATTGCCTCATGTGATTAGGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGACAAGGGGGGACAAAGGTGCTTTTTGTTTCGCCGGAGCGGTTTCTGAATGAAGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTTTAGATATTCCTTCCACAAATCTAATTCAGAAGGCACAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGGTCAGAAATAGAATGAAAGACCTACTGAATTTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTCGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTAGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACACACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACTTCCACAGATAAATGCAACTTGCACTTTGGCTTTTCACAAGACTACTCCGCCATTACTTGCCCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAACAAGCATGGGCAATATATTTTTGACATTCCATCTGTGGCGAATGACATGGGGGTTACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCGTTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACTCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTCAATGCTGCATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGTGCCGATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGGTAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTCGATTTACACCAAGAGCAGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCCTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGAGTTTAAGGTAGTGATGGAAGCAGCAAAGGAACAACTTAAGAATTTTGTTGGAAAAGATATGCTCTAG 2718 0.4481 MESNSDTDGSHISATPPRKSTPSPPPPQPPLVVSNKSRIRIKPSKSKSKPVPSGPSKTRSKPDPIYETPLSLPTDLPFQIRRPSDAPSVSHSIEALPAGYFSSFHSASFSKIRRPLLNLEPSETEQPVPTPAASHSRAESADSRKRGKSQLPNLIGASAPMPSAKPRTCGAGDGGNFVKLNMTGKRKKFLNKRGKFSGKRYKRGRFKSQHEKEEEQEEAIGELKKKGGCKRREIDCDAVEEAAAAAGDEPSEENLVKLLRLVYGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIRGGLLSSTQTPEEASESLKQLRQGGTKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLVRNRMKDLLNLIKSPPFVEVQSIIIYCKFQYETDQISRYLNDNNILAKSYHSGITAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLLPQINATCTLAFHKTTPPLLAQKVSAIAVILKRSENKHGQYIFDIPSVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIVEVPTDLLSLSADITQWLSEVENCKVQKMDAMFNAAYFALNLCDKMQGCSGADHTPCLQRKILDYFSGVGNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIEFKVVMEAAKEQLKNFVGKDML 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01280 905 FunFam ATP-dependent DNA helicase Q-like 5 454 645 - -
Pumo6g01280 905 MobiDBLite consensus disorder prediction 1 17 - -
Pumo6g01280 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 596 IPR027417 -
Pumo6g01280 905 SMART ultradead3 264 460 IPR014001 -
Pumo6g01280 905 Gene3D - 239 446 IPR027417 -
Pumo6g01280 905 NCBIfam RecQ family ATP-dependent DNA helicase 258 605 IPR004589 GO:0004386|GO:0006310
Pumo6g01280 905 MobiDBLite consensus disorder prediction 18 32 - -
Pumo6g01280 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 624 IPR001650 -
Pumo6g01280 905 CDD SF2_C_RecQ 454 587 - -
Pumo6g01280 905 MobiDBLite consensus disorder prediction 1 90 - -
Pumo6g01280 905 Pfam DEAD/DEAH box helicase 270 432 IPR011545 GO:0003676|GO:0005524
Pumo6g01280 905 Gene3D - 454 638 IPR027417 -
Pumo6g01280 905 MobiDBLite consensus disorder prediction 118 170 - -
Pumo6g01280 905 Pfam Helicase conserved C-terminal domain 481 577 IPR001650 -
Pumo6g01280 905 SMART helicmild6 497 578 IPR001650 -
Pumo6g01280 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 446 IPR014001 -
Pumo6g01280 905 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 383 392 IPR002464 -
Pumo6g01280 905 MobiDBLite consensus disorder prediction 123 137 - -
Pumo6g01280 905 FunFam ATP-dependent DNA helicase Q4 236 446 - -
Pumo6g01280 905 CDD DEXHc_RecQ4-like 256 449 - -
Pumo6g01280 905 PANTHER DNA HELICASE RECQ FAMILY MEMBER 243 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01280 Pumo-Chr6 16973787 16981711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01280 487 610 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 5.92e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01280 K10730 - gmx:100811214 1551.95