Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01269 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCCCCAATTGATGCTAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCTTTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGACATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGACCCACCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAACGACTCTAATGACAGCAACGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGCATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTGAAGAAACTCATAGAAAGGGCTCGATCTGAGGAAGACAAGCGAAAGGAATCAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGCGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCTTCTGTTCAGGGATCTATCGAGGATAGTGCTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTCTCAAAATTCAGTTGCATTAATTTCAAACCAAATAATAGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAATTGCCCAAAGACCCAACAGAAACTTTCACATCTTTGTTTGACCCCTAATTACTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAACGCCCTCCTGAAGCTCTTGATCTTAATTACTGGGGATTGGTATTATCAGAGTCTGAATCTACAAACTCGAAATCTGTAGATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCAAGTAGGTCCTTTGGAAGAGAGTGGTATCTCTGAGGAATCCATGGAAAATGGAATTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATTTTAGCTTTCTGAATGTCTTGACTGAGGGGAACAATTGGAGGAGGCAGTGTGAAGTGGTAGAACAGCTAAGGCTATTGCTGAGAGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACCGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCTGACTCCGATGTTCAATGCAAGCAAGATTCTCTGCATACTCTCTATAATCTCTCTACTTTGCCCTCCAATATTCCGTACCTTCTTTCATCTGGCATCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATTGCATTTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTACTTCTGAAGTTGGAAGGGTGGAAATCGTATCAACTCCTGGACTCATTGGTGCATTGGCTTTGATATTGGACATTGGTGAGCTCTTAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGCGAGGAATGTAGTGAGATGGTCCTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGCGGTAAAGAAAAAGCTCAGAAGCTCCTAATGTTGTTCCGAGAGCAGCGACGAGACCCTTCACCAGTTAAGACACACCAGTGCCCACCTGAAGCTAGTGATTTGTCTATGCCGCCTGCCGAAATGAAACCGCAATGCAAGTCGATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTATACCAGTGTTAA 2298 0.4169 MMDVAEVEENLFAPIDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQDIVNEFATIEFALDPPEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALAERRALKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPSVQGSIEDSAPGSHCQAFDRQLSKFSCINFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPERPPEALDLNYWGLVLSESESTNSKSVDSVSSCKLKGVQVGPLEESGISEESMENGIESVSAQEEDTEQYFSFLNVLTEGNNWRRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVREGSLMALESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHTLYNLSTLPSNIPYLLSSGIISGLQSLLVGEGDCIWTEKCIAVLINLATSEVGRVEIVSTPGLIGALALILDIGELLEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPSGKEKAQKLLMLFREQRRDPSPVKTHQCPPEASDLSMPPAEMKPQCKSISRRKSGRAFSFFWKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01269 765 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Pumo6g01269 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Pumo6g01269 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Pumo6g01269 765 Gene3D - 427 608 IPR011989 -
Pumo6g01269 765 SUPERFAMILY RING/U-box 280 357 - -
Pumo6g01269 765 PANTHER U BOX DOMAIN-CONTAINING 22 710 - -
Pumo6g01269 765 Coils Coil 176 196 - -
Pumo6g01269 765 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Pumo6g01269 765 Gene3D - 609 711 IPR011989 -
Pumo6g01269 765 SUPERFAMILY ARM repeat 429 707 IPR016024 -
Pumo6g01269 765 CDD RING-Ubox_PUB 282 334 IPR045210 -
Pumo6g01269 765 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Pumo6g01269 765 SMART arm_5 541 582 IPR000225 GO:0005515
Pumo6g01269 765 SMART arm_5 456 500 IPR000225 GO:0005515
Pumo6g01269 765 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Pumo6g01269 765 Coils Coil 762 765 - -
Pumo6g01269 765 MobiDBLite consensus disorder prediction 711 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01269 Pumo-Chr6 16897360 16901377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01269 2 764 U-box Gene Family AT1G24330 66.496 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01269 - - gmx:100794099 1379.39