Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01267 ATGGGTCGTCAAAAAATTGAGATTGAACTGATGAAGGACCTCAAGATAAGGCAGGTCGCATTCTCAAAGCGTCGAACATGTTTGTTTAAGAAAGCTAACGAGTTAACCATCTTGTGCGGTGCAGAGATTGCTATTGTTGTGTTCTCCCCTGGAGATAGGCCTTACTCATTTGGGCACCCGAGGGTTGATGTTGTTGCAGCCAAGCATCTTCAGCAAGAACCTACATCATCTGAGGCCCAAAACGCCCCTTCTTCTGACATTATTAAAATTGATGAGCATAATCAAGAACTTGATGATATTCTGAAGAAAAAGAATTATGAGGAAAAGAAAGGTGCAGAGCATGATGAGGGCATCAAACAGAAAATAAGGACACAACGCTTTGAGCTTGAAAAAACACTTGATGCATTTGAAGGGCTCAGATTAAGAGTGAAAAGTGACCTTAATGTACTTGAGGCAGCCGAAACTATGTGCTCCTTTCACAAAATGTGA 489 0.4151 MGRQKIEIELMKDLKIRQVAFSKRRTCLFKKANELTILCGAEIAIVVFSPGDRPYSFGHPRVDVVAAKHLQQEPTSSEAQNAPSSDIIKIDEHNQELDDILKKKNYEEKKGAEHDEGIKQKIRTQRFELEKTLDAFEGLRLRVKSDLNVLEAAETMCSFHKM 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01267 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g01267 162 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pumo6g01267 162 CDD MADS 2 60 - -
Pumo6g01267 162 PANTHER MADS BOX PROTEIN 3 134 - -
Pumo6g01267 162 Coils Coil 90 110 - -
Pumo6g01267 162 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Pumo6g01267 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g01267 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g01267 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01267 162 Gene3D - 15 85 IPR036879 GO:0003677|GO:0046983
Pumo6g01267 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g01267 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01267 Pumo-Chr6 16833106 16833594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01267 1 156 Type I MADS-box Gene Family AT2G34440 36.747 1.92e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g01267 SRF-TF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01267 - - aprc:113855845 160.229