Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01266 ATGAAATATACTATGTGTGTGTGTGTTTTCTTTTTTACTTTCTTTTGTGTTGTGCATCCTCTGAATTTCAATACTGGGTATGTGCTGTCTAGGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTCTTCTTCAAATGAAATTGGTTTACAACCAGTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATGGATTGTTCTTGTACATGCTTTCTACACAGATATCTCGACCTCTTCCACATAGTTGTATACAAGGTACACAATGATGGTAGATCAAATATGACTTCTCATGGAAGGAAAGCCACCATCCGGGACTTTTATGCCGTTATCCTTCCATCTCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGGACATTTGTAAGAAAGGTCATTCTAGCATAGATGGCTCGAGTTATGGCAAGAAAATGATTGAAGGAGATGGGAAACTGATCAATGTTGATTTAGAAAGAGAAGATGAATGTGGAATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACGAGGTCAGAGTCTTGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAATTCTGAGGATCTATGGGTACTCACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAGGAGGACTTGTTGCGTTTCTACCTTTATATCAACAGCTTACCTAAAGATCACCCTGATGCACTTTTCTTAATGTATTCCGAATACCTGATTTGA 774 0.4109 MKYTMCVCVFFFTFFCVVHPLNFNTGYVLSRAAAIPRAKGGTLLQMKLVYNQLAPLFLLLLQWMDCSCTCFLHRYLDLFHIVVYKVHNDGRSNMTSHGRKATIRDFYAVILPSLERLHGSLEKLDICKKGHSSIDGSSYGKKMIEGDGKLINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFYLYINSLPKDHPDALFLMYSEYLI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01266 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Pumo6g01266 257 FunFam RING/U-box superfamily protein 142 208 - -
Pumo6g01266 257 SMART ring_2 161 198 IPR001841 -
Pumo6g01266 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 210 IPR013083 -
Pumo6g01266 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Pumo6g01266 257 PANTHER RING FINGER PROTEIN 41, 151 21 255 - -
Pumo6g01266 257 Pfam Ring finger domain 159 199 IPR001841 -
Pumo6g01266 257 SUPERFAMILY RING/U-box 152 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01266 Pumo-Chr6 16819711 16822315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01266 85 210 RAD5 or RAD16-like Gene Family AT1G50410 27.211 9.17e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01266 - - gmx:100790422 452.595