Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01253 ATGGAGTCCAATTCAGACACCGACGGATCTCACATCTCTGCAACTCCACCAAGAAAATCAACTCCATCACCACCACCACCACAACCACCTCTCGTCGTTTCAAACAAATCCCGAATCAGAATCAAACCTTCAAAATCAAAATCAAAACCAGTCCCTTCCGGACCCTCCAAAACCCGCTCCAAACCCGACCCGATCTATGAAACTCCTCTCTCCCTCCCCACCGATCTCCCATTCCAAATTCGGCGACCTTCCGACGCGCCGTCAGTTTCCCACTCCATCGAAGCCCTCCCCGCCGGCTACTTCTCCTCCTTCCACTCCGCTTCCTTCTCGAAGATTCGAAGACCTCTCCTCAATCTAGAACCTTCCGAAACCGAACAACCGGTTCCTACTCCAGCCGCGTCTGATTCACGCGCCGAGAGTGCCGACTCGAGGAAGCGCGGAAAGAGCCAGCTTCCCAACCTGATCGGCGCCAGCGCGCCGATGCCGAGGGCGAAGCCGCGAACATGCGGCGCCGGCGATGGAGGGAACTTCGTGAAGCTGAACATGACTGGCAAGAGAAAGAAGTTCCTCAACAAGAGAGGGAAATTTAGCGGGAAAAGGTACAAGAGAGGGAGATTCAAATCGCAGCATGAAAAGGAGGAGGAGGAGCAAGAGGAGGCAATTGGAGAGTTGAAGAAGAAAGGGGGCTGCAAGAGGAGGGAGATTGATTGCGACGCGGTGGAAGAGGCTGCTGCCGTGGCCGGCGATGAGCCTTCGGAGGAGAATTTGGTGAAGTTGTTGAGATTGGTTTACGGTTATGATTGCTTTCGAGATGGGCAGGTTGAGGCTATCAAGATGGTTCTTGCTGGGAAGTCCAGTGTGGTTGTTTTGCCGACCGGCGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATTTTGCCTGGAGTTACACTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGTTAAGGCAATTGCCTCATGTGATTAGGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGACAAGGGGGGACAAAGGTGCTTTTTGTTTCGCCGGAGCGGTTTCTGAATGAAGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTTTAGATATTCCTTCCACAAATCTAATTCAGAAGGTGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGGTCAGAAATAGAATGAAAGACCTACTGAATTTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTCGCAACTGTGGCATTTGGCATGGGACTTGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTAGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACACACAGTGAAGGTGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACTTCCACAGATAAATGCAACTTGCACTTTGGCTTTTCACAAGACTACTCCGCCATTACTTGCCCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAACAAGCATGGGCAATATATTTTTGACATTCCATCTGTGGCGAATGACATGGGGGTTACAGCAGTTGAATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCGTTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACTCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTCAATGCTGCATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTAGTGCCGATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTCGATTTACACCAAGAGCAGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCCTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGAGTTTAAGGTAGTGATGGAAGCAGCAAAGGAACAACTTAAGAATTTTGTTGGAAAAGATATGCTCTAG 2721 0.4473 MESNSDTDGSHISATPPRKSTPSPPPPQPPLVVSNKSRIRIKPSKSKSKPVPSGPSKTRSKPDPIYETPLSLPTDLPFQIRRPSDAPSVSHSIEALPAGYFSSFHSASFSKIRRPLLNLEPSETEQPVPTPAASDSRAESADSRKRGKSQLPNLIGASAPMPRAKPRTCGAGDGGNFVKLNMTGKRKKFLNKRGKFSGKRYKRGRFKSQHEKEEEEQEEAIGELKKKGGCKRREIDCDAVEEAAAVAGDEPSEENLVKLLRLVYGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIRGGLLSSTQTPEEASESLKQLRQGGTKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKVQLRDNFHLSVSLVRNRMKDLLNLIKSPPFVEVQSIIIYCKFQYETDQISRYLNDNNILAKSYHSGITAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLLPQINATCTLAFHKTTPPLLAQKVSAIAVILKRSENKHGQYIFDIPSVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIVEVPTDLLSLSADITQWLSEVENCKVQKMDAMFNAAYFALNLCDKMQGCSSADHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIEFKVVMEAAKEQLKNFVGKDML 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01253 906 MobiDBLite consensus disorder prediction 1 17 - -
Pumo6g01253 906 NCBIfam RecQ family ATP-dependent DNA helicase 259 606 IPR004589 GO:0004386|GO:0006310
Pumo6g01253 906 Gene3D - 240 447 IPR027417 -
Pumo6g01253 906 PANTHER DNA HELICASE RECQ FAMILY MEMBER 242 773 - -
Pumo6g01253 906 MobiDBLite consensus disorder prediction 118 172 - -
Pumo6g01253 906 MobiDBLite consensus disorder prediction 18 32 - -
Pumo6g01253 906 Gene3D - 455 639 IPR027417 -
Pumo6g01253 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 447 IPR014001 -
Pumo6g01253 906 SMART ultradead3 265 461 IPR014001 -
Pumo6g01253 906 Coils Coil 207 227 - -
Pumo6g01253 906 Pfam Helicase conserved C-terminal domain 482 578 IPR001650 -
Pumo6g01253 906 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 625 IPR001650 -
Pumo6g01253 906 MobiDBLite consensus disorder prediction 1 90 - -
Pumo6g01253 906 FunFam ATP-dependent DNA helicase Q4 237 447 - -
Pumo6g01253 906 CDD DEXHc_RecQ4-like 257 450 - -
Pumo6g01253 906 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 384 393 IPR002464 -
Pumo6g01253 906 CDD SF2_C_RecQ 455 588 - -
Pumo6g01253 906 SMART helicmild6 498 579 IPR001650 -
Pumo6g01253 906 MobiDBLite consensus disorder prediction 123 137 - -
Pumo6g01253 906 Pfam DEAD/DEAH box helicase 271 433 IPR011545 GO:0003676|GO:0005524
Pumo6g01253 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 597 IPR027417 -
Pumo6g01253 906 FunFam ATP-dependent DNA helicase Q-like 5 455 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01253 Pumo-Chr6 16602917 16610996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01253 488 611 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 6.83e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01253 K10730 - gmx:100811214 1549.64