Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01250 ATGGCGGCTGGGAGACATGGCGGTTACCGCGAAAACGAGTTCAGAGAGCGCGAATCTAAGCTGGAAGTTTCTAGACGCGGATTCGCGAACTCGAAAGAGGATTACGATCGTGTTAGGAATGGTGGCGGTGATGTTGTGAGGGGTGGGTCAAGGGATAGGGATAGGGTTAGGGTGAGGCAGAAGGATATTAAGGAGAGGGAAGGTGTTAATGGTGGTTATCGATCCTCTTCGAGTAGGAGCGACTCTGGCAACAGTGGCCTTGGTCCTCGCCGGTGTGGTTTCTCTGTCAAGGCAATTGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGCTCTGATGATGCTATTGAATCAGAGCCGGGGGTGAAAGACTCCGAGGTTGCCATGTTGGAAGAAACCAGGACTCGATCGCCTCTGGCGCCGGAGAGGAAAAGGAAGTTTTCGCCCATAGTGTGGGATCAGGATGACAAGGATGTCAACGAGTCATCCAAAGTTAGGGTTTCTGCCTCGGCAGTGCTTCCTCCTCCGCCTCCATTGCCAAAGGTGTTCCGTCAGTCACAGTCGCCGAATGCTCTGGACGGTGGAGTTGAAATACATCCTGTCAAGAACAGGGAGACTGAGGATCTTCAGTTGAATGCAGCATCTAAGGTTACCTTGCCCTCTCCTTCAGGTTTGCATTCATTGCCGCCAAAAGGAAGGTGGGCTAATGATCTGGAAGCCGAGCATCCAGAAGGTGAAGATTATGTCCCAACTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAGATCCTCAATGATGAGGAAATGCCCAAATGGAGGAGGAGGGTGTCTCCTGAATTATTGGATGGTAGACTAAGGAACAAGCTATTGAGCCCTGAGGAATCTAAGGTAGAAGGTATTGAAAGAGCTAGAGCCAGATCATCTGATTCTGAAGAAAGAGGTGTCCGTGGGAGAACTTCCAGTGGTGATGATCATCATGGTATTGAGTCAGAGAAGGATGACTACATGGAGATTGATGCTCAAGGTGGGAAAAGTGAAACCAGTGTCAGTCACTCAGACACGGATTCTGAAGATGAAGATGATGGCCGGGAGACCCCAGAACCTCTTGCTCCACCGCAAAGAACAGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATACGGTGTTGTATATAGGGCTAGGGATAAAAAGACTGGAGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAGGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCCATAGTTGACGTTAAAGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTCATGGAATATATGGAACATGACCTTAAAGGACTAATGGAGGCAATGAAGCAACCTTTTAGCCAAAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGAGCTCAAAATTTGTGATTTTGGCTTGGCTCGTCAGTATGGGAGTCCTTTAAAGCCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCACTGTTTAATGGGAAAACAGAGTTTGATCAACTTGACAAGATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACATCAGTACAACCTCCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCCGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAGAAGCGGATCACTGCCGAAGCTGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTTCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCAGGGACTGGTGGAATTTTTGGCTAA 2232 0.4651 MAAGRHGGYRENEFRERESKLEVSRRGFANSKEDYDRVRNGGGDVVRGGSRDRDRVRVRQKDIKEREGVNGGYRSSSSRSDSGNSGLGPRRCGFSVKAIDREPGELSSESGSDDAIESEPGVKDSEVAMLEETRTRSPLAPERKRKFSPIVWDQDDKDVNESSKVRVSASAVLPPPPPLPKVFRQSQSPNALDGGVEIHPVKNRETEDLQLNAASKVTLPSPSGLHSLPPKGRWANDLEAEHPEGEDYVPTRNISSSRWAAGDNSPGDEGEILNDEEMPKWRRRVSPELLDGRLRNKLLSPEESKVEGIERARARSSDSEERGVRGRTSSGDDHHGIESEKDDYMEIDAQGGKSETSVSHSDTDSEDEDDGRETPEPLAPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRVRRIYKSPDPLEEQRRKELQQGESGTGGIFG 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01250 743 MobiDBLite consensus disorder prediction 116 163 - -
Pumo6g01250 743 FunFam Cyclin-dependent kinase G-2 480 719 - -
Pumo6g01250 743 ProSiteProfiles Protein kinase domain profile. 397 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01250 743 MobiDBLite consensus disorder prediction 718 743 - -
Pumo6g01250 743 Pfam Protein kinase domain 397 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01250 743 SMART serkin_6 397 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01250 743 MobiDBLite consensus disorder prediction 718 732 - -
Pumo6g01250 743 CDD STKc_CDC2L1 391 688 IPR045267 GO:0004674|GO:0005524|GO:0006468
Pumo6g01250 743 Gene3D Phosphorylase Kinase; domain 1 382 479 - -
Pumo6g01250 743 FunFam cyclin-dependent kinase G-2 isoform X1 382 479 - -
Pumo6g01250 743 SUPERFAMILY Protein kinase-like (PK-like) 389 694 IPR011009 -
Pumo6g01250 743 MobiDBLite consensus disorder prediction 214 384 - -
Pumo6g01250 743 PANTHER CELL DIVISION PROTEIN KINASE 395 694 - -
Pumo6g01250 743 MobiDBLite consensus disorder prediction 273 349 - -
Pumo6g01250 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Pumo6g01250 743 Gene3D Transferase(Phosphotransferase) domain 1 480 719 - -
Pumo6g01250 743 MobiDBLite consensus disorder prediction 8 69 - -
Pumo6g01250 743 MobiDBLite consensus disorder prediction 1 198 - -
Pumo6g01250 743 MobiDBLite consensus disorder prediction 71 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01250 Pumo-Chr6 16572062 16579388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01250 388 733 Core Cell Cycle Gene Families AT5G10270 45.304 2.35e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Pumo6g01250 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01250 K08818 - gmx:100792524 1313.52