Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01244 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCCCCAATTGATGCTAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATATATTACAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCTTTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGACATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAACGACTCTAATGACAGCAGCGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGCATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCGATCTGAGGAAGACAAGCGAAAGGAATCAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGCGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCTTCTGTTCAGGGATCTATCGAGGATAGTGCTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTCTCAAAATTCAGTTGCATTAATTTCAAACCAAATAATAGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAATTGCCCAAAGACCCAACAGAAACTTTCACATCTTTGTTTGACCCCTAATTACTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAACGCCCTCCTGAAGCTCTTGATCTTAATTACTGGGGATTGGTATTATCAGAGTCTGTAGATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCAAGTAGGTCCTTTGGAAGAGAGCGGTATCTCTGAGGAATCCATGGAAAATGGAATTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATTTTAGCTTTCTGAATGTCTTGACTGAGGGGAACAATTGGAGGAGGCAGTGTGAAGTGGTAGAACAGCTAAGGCTATTGCTGAGAGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCTGACTCCGATGTTCAATGCAAGCAAGATTCTCTGCATACTCTCTATAATCTCTCTACTTTGCCCTCCAATATTCCGTACCTTCTTTCATCTGGCATCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATTGCATTTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTACTTCTGAAGTTGGAAGGGTGGAAATCGTATCAACTCCTGGACTCATTGGTGCATTGGCTTTGATATTGGACATTGGTGAGCTCTTAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGCGAGGAATGTAGTGAGATGGTCCTGCAAGAAGGGGTTATACCAGCATTGGTTTCTATATCAGTGAATGGGACCCCAAGCGGTAAAGAAAAAGCTCAGAAGCTCCTAATGTTGTTCCGAGAGCAGCGACGAGACCCTTCACCAGTTAAGACACACCAGTGCCCACCTGAAGCTAGTGATTTGTCTATGCCGCCTGCCGAAATGAAACCGCTATGCAAGTCGATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTATACCAGTGTTAA 2277 0.4177 MMDVAEVEENLFAPIDAKLHGQMCKTLSIIYYKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQDIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSSELESFHQAATRLGITSSRAALAERRALKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPSVQGSIEDSAPGSHCQAFDRQLSKFSCINFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPERPPEALDLNYWGLVLSESVDSVSSCKLKGVQVGPLEESGISEESMENGIESVSAQEEDTEQYFSFLNVLTEGNNWRRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVREGSLMALESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHTLYNLSTLPSNIPYLLSSGIISGLQSLLVGEGDCIWTEKCIAVLINLATSEVGRVEIVSTPGLIGALALILDIGELLEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPSGKEKAQKLLMLFREQRRDPSPVKTHQCPPEASDLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKSYSVYQC 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01244 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Pumo6g01244 758 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Pumo6g01244 758 SMART arm_5 449 493 IPR000225 GO:0005515
Pumo6g01244 758 SMART arm_5 534 575 IPR000225 GO:0005515
Pumo6g01244 758 SUPERFAMILY ARM repeat 422 700 IPR016024 -
Pumo6g01244 758 SUPERFAMILY RING/U-box 280 357 - -
Pumo6g01244 758 PANTHER U BOX DOMAIN-CONTAINING 24 703 - -
Pumo6g01244 758 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Pumo6g01244 758 Coils Coil 176 196 - -
Pumo6g01244 758 CDD RING-Ubox_PUB 282 334 IPR045210 -
Pumo6g01244 758 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Pumo6g01244 758 Gene3D - 602 703 IPR011989 -
Pumo6g01244 758 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Pumo6g01244 758 Gene3D - 420 601 IPR011989 -
Pumo6g01244 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 506 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01244 Pumo-Chr6 16521606 16526274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01244 2 757 U-box Gene Family AT1G24330 65.854 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01244 - - gmx:100794099 1361.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01244 6 16521606 16526274 Pumo6g01244 6 16521606 16526274 ECH
Pumo1g00441 1 6054728 6059758 Pumo6g01244 6 16521606 16526274 PCT