Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01237 ATGCTTGTACGTTGTTATCTTGTTCTGCTGCTGCTGCAGCTACGAGTTGCTTTCTTCGCTCTGCGATCAGTTGCGGTGTCCATGTGCCAAGTAAGACGCCATGCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGAACAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAATCAGCCAAATTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAACGCTGAAGTGAAGGGTTTGGATGTTGATGCACTGTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCATGCCACATAGAGTTGATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTGGCAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGTGCTTCGTCCTAG 609 0.4647 MLVRCYLVLLLLQLRVAFFALRSVAVSMCQVRRHACKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLATSKKSQALRSGASS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01237 202 FunFam 60S ribosomal protein L17 25 196 - -
Pumo6g01237 202 CDD Ribosomal_L22 36 172 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo6g01237 202 Pfam Ribosomal protein L22p/L17e 38 173 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pumo6g01237 202 ProSitePatterns Ribosomal protein L22 signature. 148 172 IPR018260 GO:0003735|GO:0005840|GO:0006412
Pumo6g01237 202 MobiDBLite consensus disorder prediction 177 202 - -
Pumo6g01237 202 SUPERFAMILY Ribosomal protein L22 33 175 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo6g01237 202 Gene3D Ribosomal protein L22/L17 28 201 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pumo6g01237 202 PANTHER 60S RIBOSOMAL PROTEIN L17 33 195 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pumo6g01237 202 NCBIfam 50S ribosomal protein L22 33 175 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01237 Pumo-Chr6 16426774 16433381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01237 35 202 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.500 3.96e-108 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01237 K02880 - gmx:100499784 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01237 6 16426774 16433381 Pumo6g01237 6 16426774 16433381 ECH
Pumo1g00446 1 6128218 6133615 Pumo6g01237 6 16426774 16433381 PCT