Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01214 ATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGTGTTTTCCAGGTGGTGGTGGTGGCAAGATGTGGCACAAATGGTGGGAGAAGATCTCAGGGCAGGGTTGCAAAATCCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTGAAGAGAGCTTTGTGGAGGAAGCTTTTGCTGACATGGGTCGTGGGTTGGATCATAGTATCTTTGTGGATCTTGTGCTACATGAGCTTGCAAGGTACTGAGAAGAGGAAAGAAACTCTGGCTAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCCACCTTCCACCATGCTAAGAACCCCTCAGCCATCGATCAGAAAACTTTTGCAAAGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGATGGACCATCAAGAGGATGGATACTCTAGAGCAGAACCCCGTTCATAAGGACGATTATGCCCTGGAGGCATTGGAGCCATCCCCCGTTCAGGAAGAATATGCTCCTGTCATCTTTGCGCAGGATACAATTGCACATGTGATTTCTGTAAATGTGCTTTCCGGAAAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGGCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTAGCAAGCAAGCAGACTGTTATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATGAATCAGGGGATGTTTTCTATCACGTCAGCACTCTTAACTTTGGAGACCCTTTTAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACTTCATTTGGTATCCTTGTTATTGCACTCCTTGTTGGCCATATTTTCCATGCCACTGTGAATCGAATTGCCAAAGTAGAAGATGATTACCGTAAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAATGAGGTTTTGGATCAGGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTCGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTACTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCATTTAAGTTCACCGACAAAGGACATATTTTTGTCACAATCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAAAGAATCCAACTCAGAAAATACCTTGAGTGGTTCCCCTGTTGCCGATAGTCGCCGGAGCTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTCTCATCCCCCTCCAATGATCTTGTCAATTTGATTATATCTGTTGAGGATACAGGTGAAGGTATTCCTCTTGAATCTCAGCCCCTCATCTTCACCCCATTCATGCAGGTAGGTCCATCAATCTCCCGAAAGCATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCATACCCAAGATTGGATCCACATTCACTTTTACTGCTGTATTCACCAATGGACTCCGCAGTTCAAATGAGTGTAAAATTCAGAAAATCAACAACCAACCTCATTCTGCTTCTTCAGAATTTGAGGGGATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCAGATTTAAACCAAGGTTTGTCAATCATAAGCAATGGGAATATAGTTATTAAAATGGTCCTGATTGAGCAGCAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCTCTTTGTCAATAACACAAGGAGAATTGATCATAGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTGTAAACTTGGGTGTTCATAATCCTACTGTCATCACCAAACCTCTGAGAACAAGTATGCTTGCTGCCTCACTACAACGAGCCATGGGTGTCCAAAACAAGGGAGCTCCTCATAGAGAGCTCCAAAGTTTATCTCTTCGCCATCTTCTTCGTGGCAGGAAAATTCTAATTGTAGATGACAATAGTGTGAACCGTGCAGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCCATCTCATCCTTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGATTTGAAGCTACAAAGCGAATTAGGGATATGGAAGAGAGTGTGAACAGAGAAGTATCTATGGAGGACTTTGAGAATATTACAAACTGGCATGTACCGATTTTAGCCATGACTGCAGATGTGATACAGGCTACACACGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGGTTTTTCCAGTCATCTGGAAAAGAAAATTCAGTGCTGATTTAA 3111 0.4282 MSLLHVVGFGLKVGHLLLVLCCWVVSVVYLNWFISSGIMDTKMCFPGGGGGKMWHKWWEKISGQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWIIVSLWILCYMSLQGTEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYALEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNESGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIALLVGHIFHATVNRIAKVEDDYRKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLMGNSFKFTDKGHIFVTIHLVEEVVHSIEVDKESNSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDLVNLIISVEDTGEGIPLESQPLIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGLRSSNECKIQKINNQPHSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEMVSDLNQGLSIISNGNIVIKMVLIEQQVWDRDLGLSSLFVNNTRRIDHRVPPKLFILVNSSSSFKASVNLGVHNPTVITKPLRTSMLAASLQRAMGVQNKGAPHRELQSLSLRHLLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIRDMEESVNREVSMEDFENITNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQSSGKENSVLI 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01214 1036 SMART REC_2 892 1021 IPR001789 GO:0000160
Pumo6g01214 1036 PANTHER TWO-COMPONENT HISTIDINE KINASE 97 1018 - -
Pumo6g01214 1036 Gene3D - 887 1030 - -
Pumo6g01214 1036 SUPERFAMILY CheY-like 743 869 IPR011006 -
Pumo6g01214 1036 Gene3D - 508 719 IPR036890 -
Pumo6g01214 1036 CDD HisKA 444 505 IPR003661 GO:0000155|GO:0007165
Pumo6g01214 1036 SMART HKATPase_4 556 719 IPR003594 -
Pumo6g01214 1036 CDD PRTases_typeI 842 921 IPR000836 -
Pumo6g01214 1036 Pfam Response regulator receiver domain 894 1020 IPR001789 GO:0000160
Pumo6g01214 1036 Coils Coil 421 441 - -
Pumo6g01214 1036 Gene3D CHASE domain 161 390 IPR042240 -
Pumo6g01214 1036 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Pumo6g01214 1036 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Pumo6g01214 1036 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Pumo6g01214 1036 FunFam Histidine kinase 4 416 507 - -
Pumo6g01214 1036 Gene3D - 412 507 - -
Pumo6g01214 1036 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 498 714 IPR036890 -
Pumo6g01214 1036 FunFam Histidine kinase 4 161 390 - -
Pumo6g01214 1036 Pfam His Kinase A (phospho-acceptor) domain 444 507 IPR003661 GO:0000155|GO:0007165
Pumo6g01214 1036 Pfam CHASE domain 160 356 IPR006189 -
Pumo6g01214 1036 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 717 IPR003594 -
Pumo6g01214 1036 SMART HisKA_10 444 509 IPR003661 GO:0000155|GO:0007165
Pumo6g01214 1036 CDD REC_hyHK_CKI1_RcsC-like 894 1021 - -
Pumo6g01214 1036 ProSiteProfiles CHASE domain profile. 157 383 IPR006189 -
Pumo6g01214 1036 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 431 510 IPR036097 GO:0000155|GO:0007165
Pumo6g01214 1036 SMART CHASE_2 157 358 IPR006189 -
Pumo6g01214 1036 ProSiteProfiles Response regulatory domain profile. 893 1025 IPR001789 GO:0000160
Pumo6g01214 1036 Gene3D - 108 160 - -
Pumo6g01214 1036 ProSiteProfiles Histidine kinase domain profile. 451 719 IPR005467 -
Pumo6g01214 1036 CDD HATPase_EvgS-ArcB-TorS-like 561 717 - -
Pumo6g01214 1036 ProSiteProfiles Response regulatory domain profile. 747 868 IPR001789 GO:0000160
Pumo6g01214 1036 SUPERFAMILY CheY-like 889 1025 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01214 Pumo-Chr6 16083044 16091514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01214 1 1033 Miscellaneous Gene Families AT1G27320 68.851 0.0 1438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo6g01214 CHASE 5.4e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01214 K14489 - gmx:100801546 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01214 6 16083044 16091514 Pumo6g01214 6 16083044 16091514 ECH