Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01212 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAGGCACAAGCCAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGTAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAAAGGCTGAAGGTTGGAAATGTAGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCCACTTTTCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGGAACACAAGTGAGGGAAAGCTCAGTTCTGGAGCTGGCGCACAATTGTCACCAACTTCCTCTTCTGCTTTTAGTCCGAGTCCTAGCCCATATTCTACTCAGAATCCAGGGTCAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGATCTACAGAAGTTACCTCTGATATAGTCGTTCTGAACAATAAAATGGGTCACATGGATGGAACAGATACAGAATCAGGAACCTCGTCTGAACTTGAGGTTACTCAAGCTTTGCGCAGATTGGAGGTGCAGTTAAGTTTGAATGAGGACAACTTTGAAGATATTGTTCCCTTCTGCAATAAGCACGAAACTGCACATGATTCAAACCCTCAGCATGATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCAGCTTTCTCTGGATCTGATGATCAAGGGCTATTTTATGATGGATATAATGGAAGGCAAGGTGATGGTGGTGAATGTTATCATGAATTAATGGACCATGGTTACCCTGAGGGAAATGAAAATGCTTTATGGACAGAGGTGCTGGAATCATGTAACTCCTCATCTGCAGTCAAGTTACCACAGAAAAATGTATACATGCCAGCTGAAAATGAAAATTCAGTATCTTCTGCGAGAAGGGTACCAGTTTCCAACCAGGAAAACAGTCACTGGCTCAACTTCAACAGTAATAATTCTGAAAACTCTGTTTTCTCACTATCTCAAGGTGTTGATGAAGTCAAATTTCCTGCATATTCTTCTATGGTGGAAACACAAGTAATTAATTCTGACTACTATGAAACATTGTTTGACCAAAGCCAAATTGGAGCACCTCCAGATGCAGATTCTAGCTTGACTGTTGCACAAAAACAGAAATTTACTATTAAGACAATCTCCCCAGAATGGGGTTATGCCACTGAGACTACTAAGGTCATCGTTGTTGGGTCTTTTCTCTGTCATCCCTCGGATTCTGCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGTTGAGATAATTAAGGATGGTGTAATCTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGAGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATTGTGATAAGACCAATAGTTGCACTAGATGTACTCAATCGGAAACTGAAGCCACTAGAAGTGCAGAAGAGCTGTTATTACTTGTTAGACTAGGGCAGATGCTTCTTTCTGAATCAACAATAAAGAATGACAACATAGAATCTGGAATTCCTCTCATAAAACAGAAAGCTGATGATGACTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACGTCGACCGGTACTGTTAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAATGGCTTTCTTGCAGATCTCAGGAAAAAGATGAAGAGACAGGCTGCCCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTAGGTTTTGAGTGGGCCTTGAACCCTATTCTCACTTGTGGAGTCAATATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGTTAAATGTAGAAATTGATGACAACACTGAGGAGAAAAAACTGGTTGCTTCACTTATAGCTTCAGGAGCATCTGCAGGAGCTGTGACAGATCCAAATGCACATGATCCAATCGGTAAAACTGCTGCAGCTATTGCAGCCAGCAGTGGGCACAAGGGACTGGCAGGGTATCTTTCTGAGGTAGCTGTAACAAGCCATCTGTCATCGCTTACACTGGAAGAGAGTGAATTATCTAAAAGTTCTGCTGAGCTTCAGGCAGATATGACTGTTAACAGTGTCTCCAAGGAAAATCTTGCTGCCAGTGAGGGTCAGGCGTCACTCAAAGATACCTTAACTGCTATCAGAAATATAACTCAGGCAGCTGCGCGGATACAGTCTGCTTTTCGCTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTAGTGCGGGTGGCATTGGTACCACAGAGATTTCTGCTATATCAAAACTTGCCTTTCGGAACTCACGCGAATATAATTCAGCTGCTTTATCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCCTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGCTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCAATGAAAATCAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCACCGGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAAGCATCATTATCAACTTCTGTAGAAGATGCCTTATTTCTGGATGATTTTTATCCATTTCCCTAG 2970 0.4306 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRNTSEGKLSSGAGAQLSPTSSSAFSPSPSPYSTQNPGSTSILGDSYEPNQSFSSPGSTEVTSDIVVLNNKMGHMDGTDTESGTSSELEVTQALRRLEVQLSLNEDNFEDIVPFCNKHETAHDSNPQHDQRVISNQEQSAAFSGSDDQGLFYDGYNGRQGDGGECYHELMDHGYPEGNENALWTEVLESCNSSSAVKLPQKNVYMPAENENSVSSARRVPVSNQENSHWLNFNSNNSENSVFSLSQGVDEVKFPAYSSMVETQVINSDYYETLFDQSQIGAPPDADSSLTVAQKQKFTIKTISPEWGYATETTKVIVVGSFLCHPSDSAWACMFGDVEVPVEIIKDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYCDKTNSCTRCTQSETEATRSAEELLLLVRLGQMLLSESTIKNDNIESGIPLIKQKADDDSWSHIIEALLVGSGTSTGTVNWLLEELLKDKLQQWLSCRSQEKDEETGCPLSKKEQGIIHMVAGLGFEWALNPILTCGVNINFRDINGWTALHWAARFGRLNVEIDDNTEEKKLVASLIASGASAGAVTDPNAHDPIGKTAAAIAASSGHKGLAGYLSEVAVTSHLSSLTLEESELSKSSAELQADMTVNSVSKENLAASEGQASLKDTLTAIRNITQAAARIQSAFRSHSFRKRRAREAAASAGGIGTTEISAISKLAFRNSREYNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDINENQDEDEDILKVFRKQKVDVEIEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSDEASLSTSVEDALFLDDFYPFP 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01212 989 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 962 - -
Pumo6g01212 989 Pfam IPT/TIG domain 423 506 IPR002909 -
Pumo6g01212 989 Gene3D - 830 879 - -
Pumo6g01212 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 877 IPR027417 -
Pumo6g01212 989 FunFam Calmodulin-binding transcription activator 2 417 510 - -
Pumo6g01212 989 SUPERFAMILY Ankyrin repeat 621 725 IPR036770 -
Pumo6g01212 989 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Pumo6g01212 989 Pfam IQ calmodulin-binding motif 833 851 IPR000048 GO:0005515
Pumo6g01212 989 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Pumo6g01212 989 ProSiteProfiles IQ motif profile. 781 810 IPR000048 GO:0005515
Pumo6g01212 989 Gene3D Immunoglobulins 417 512 IPR013783 -
Pumo6g01212 989 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Pumo6g01212 989 CDD IPT 423 506 - -
Pumo6g01212 989 Gene3D - 576 730 IPR036770 -
Pumo6g01212 989 ProSiteProfiles Ankyrin repeat profile. 652 695 IPR002110 GO:0005515
Pumo6g01212 989 FunFam Calmodulin-binding transcription activator 4 isoform A 533 728 - -
Pumo6g01212 989 FunFam Calmodulin-binding transcription activator 2 830 878 - -
Pumo6g01212 989 ProSiteProfiles IQ motif profile. 854 879 IPR000048 GO:0005515
Pumo6g01212 989 SUPERFAMILY E set domains 423 506 IPR014756 -
Pumo6g01212 989 SMART CG_1_2 12 130 IPR005559 GO:0003677
Pumo6g01212 989 MobiDBLite consensus disorder prediction 133 185 - -
Pumo6g01212 989 Coils Coil 949 969 - -
Pumo6g01212 989 SMART iq_5 780 802 IPR000048 GO:0005515
Pumo6g01212 989 SMART iq_5 853 875 IPR000048 GO:0005515
Pumo6g01212 989 SMART iq_5 830 852 IPR000048 GO:0005515
Pumo6g01212 989 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01212 Pumo-Chr6 16061671 16070940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01212 5 981 CAMTA Transcription Factor Family AT1G67310 52.683 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pumo6g01212 CG-1 1.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01212 K21596 - gmx:100786880 1741.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01212 6 16061671 16070940 Pumo6g01212 6 16061671 16070940 ECH
Pumo1g00468 1 6312668 6314641 Pumo6g01212 6 16061671 16070940 PCT