Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01208 ATGGGGAAGAAGAAGGTGGAGATAAAGCGAATCGAGAACAAAAGCAGTCGGCAGATAACATTCTCGAAGAGGCGCAATGGATTGATGAAGAAAGCTCGCGAGTTATCCATTCTCTGCGATGCGAAAGTGGCGCTGGTCATCTTCTCCAGCACCGGGAAGCTTTTCCAGCTCTGCAACGGTGACAGTTTGGCCGAGGTCGTGCAGCGATATTGGGATCATTTAGAAGCGAGCGGTACTGACACAAAGGAACTCCGCTTTGAAATTGCAGATATCTGTTCTGGTTCAGCGTTTTCTCAATTGGTCAAAAGGCACTTTGGTGTTTCTGAACTTGAGCATCTGAGTGTGACTGACCTTATGGAACTAGAGAAACTGATTCATACTGCTCTTTCGCGAATCAAATCAGCAAAGATGCGATTGATGATGGAATCTGTAGTGAATCTTAAGAAAAAGGAACATATCTTGAGAAATGAAAATGAGCTTTTGAAGAAACAGATTGAGGCACTGGAAAAAGCTAATGACGTCAATAACGTAGTGACACTGTCTATGGACTATGATCAAGCAGATGGGGTGACGCATAATCTGCTCCCTAGTATCAAATGTAGCTGTCTGGAAGCCACGACTCTGGATCTAACTTGCACAATCGAACCATGA 651 0.4439 MGKKKVEIKRIENKSSRQITFSKRRNGLMKKARELSILCDAKVALVIFSSTGKLFQLCNGDSLAEVVQRYWDHLEASGTDTKELRFEIADICSGSAFSQLVKRHFGVSELEHLSVTDLMELEKLIHTALSRIKSAKMRLMMESVVNLKKKEHILRNENELLKKQIEALEKANDVNNVVTLSMDYDQADGVTHNLLPSIKCSCLEATTLDLTCTIEP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01208 216 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Pumo6g01208 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Pumo6g01208 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 Pfam K-box region 82 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo6g01208 216 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Pumo6g01208 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g01208 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 - -
Pumo6g01208 216 Coils Coil 118 138 - -
Pumo6g01208 216 Coils Coil 144 174 - -
Pumo6g01208 216 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01208 Pumo-Chr6 15992198 16028673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01208 1 165 MADS-box Gene Family AT5G65060 41.818 7.17e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo6g01208 K-box 7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01208 - K09264 gmx:100804540 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01208 6 15992198 16028673 Pumo6g01208 6 15992198 16028673 ECH