Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01189 ATGGACGAGGACTTTGAGTTCCCAAGTGCTGGCAACATGGAAATTCCTGAAGAGGAAGAGGTTGAGAGTCCGATCCTGAAGGTTGGGGAGGAGAAGGAGATTGGGAAGAATGGGCTGAAGAAGAAGCTGCTCAAGGAAGGTGAAGGTTGGGACACCCCTGACGCTGGAGACCAAGTTGAAGTGCATTATACCGGAACCTTGCTTGATGGAACCAAATTTGATTCTAGCCGTGATAGGGGTACCCCTTTCAAGTTCAAGCTTGGCCAAGGGCAAGTGATCAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAGAATGCCCTTTTCACAATACCCCCAGAATTGGCCTATGGAGAGTCTGGGTCTCCTCCCACCATTCCTCCCAATGCAACTCTGCAGTTTGATGTGGAGTTGCTATCTTGGACAAGTGTGAAGGACATATGCAAGGATGGAGGAATTTTGAAGAACATAATTACTGAAGGAGAGAAATGGGATAATCCTAAGGACATGGATGAAGTGTTTATTAAATATGAAGCTAGGCTTGAAGACGGGACGGTCATTTCAAAATCTGATGGGGTGGAGTTCACCGTGGAAGAAGGGTATTTCTGTCCTGCTTTGGCCAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCAGGAGATGAAGGTGCCGTACCTCCAAATGCTTCCCTTCAAATAGATCTTGAGTTGGTCTCGTGGAAGACCGTATCTGACATTACCAAGGATAGAAGGGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTAGTTCAAGTGAAACTTATTGGCAAGCTGCAAGATGGAACTGTCTTCATTAAGAAGGGCTATGATGATGAACAGCCATTCGAGTTCAAAATTGATGAAGAACAAGTAATTGATGGACTTGACAAAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCATTGTTGATCATACAGCCTGAATATGCTTTTGGTCCATCTGGGTCCCCTCAGGAATTGGCTAATGTTCCTCCCAATGCCACTGTGTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGAAGAAGGGAATGCTTTATTTAAGGTTGGCAAATATGAAAGAGCTTCAAAGAGATATGAAAAGATCTTATTTGTTACTGATGTGATGAGGAGAAAACAGCAGACTAAGGCATTGAAAATCACATGCAATCTCAACAACGCAGCCTGTAAGTTGAAGTTAAAGGACTTCAAACAGGCAGAGAAGATGTGCACAAAGGTGTTAGAGCTTGACAGTAGAAATGTAAAAGCACTCTATCGGAGGGCACAAGCATATCTTCATCTTGTAGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGGGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAATACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAATAAACTAGAACAAGCAAGAACAGCAACAGCGAAGCAGGAGCCTGTGCCAATGACTATTGACAGTAAAGCTTAA 1698 0.434 MDEDFEFPSAGNMEIPEEEEVESPILKVGEEKEIGKNGLKKKLLKEGEGWDTPDAGDQVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDNPKDMDEVFIKYEARLEDGTVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLNVKPQYAFGESGRPASGDEGAVPPNASLQIDLELVSWKTVSDITKDRRVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGYDDEQPFEFKIDEEQVIDGLDKAVKNMKKGEIALLIIQPEYAFGPSGSPQELANVPPNATVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKVGKYERASKRYEKILFVTDVMRRKQQTKALKITCNLNNAACKLKLKDFKQAEKMCTKVLELDSRNVKALYRRAQAYLHLVDLDLAEMDIKKALEIEPDNRDVKMEYKILKQKVREYNKKDAQFYGSIFAKMNKLEQARTATAKQEPVPMTIDSKA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01189 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 258 IPR001179 GO:0003755
Pumo6g01189 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Pumo6g01189 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Pumo6g01189 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Pumo6g01189 565 Gene3D - 262 383 IPR046357 GO:0003755
Pumo6g01189 565 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 152 264 - -
Pumo6g01189 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Pumo6g01189 565 MobiDBLite consensus disorder prediction 1 29 - -
Pumo6g01189 565 SUPERFAMILY FKBP-like 148 264 - -
Pumo6g01189 565 FunFam Peptidylprolyl isomerase 148 261 - -
Pumo6g01189 565 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Pumo6g01189 565 FunFam Peptidylprolyl isomerase 386 536 - -
Pumo6g01189 565 FunFam Peptidylprolyl isomerase 29 147 - -
Pumo6g01189 565 MobiDBLite consensus disorder prediction 1 19 - -
Pumo6g01189 565 SUPERFAMILY TPR-like 387 542 IPR011990 GO:0005515
Pumo6g01189 565 Coils Coil 509 529 - -
Pumo6g01189 565 FunFam Peptidylprolyl isomerase 262 383 - -
Pumo6g01189 565 Gene3D - 28 147 IPR046357 GO:0003755
Pumo6g01189 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Pumo6g01189 565 SUPERFAMILY FKBP-like 33 149 - -
Pumo6g01189 565 SUPERFAMILY FKBP-like 264 398 - -
Pumo6g01189 565 Gene3D - 148 261 IPR046357 GO:0003755
Pumo6g01189 565 Pfam Tetratricopeptide repeat 477 509 IPR019734 GO:0005515
Pumo6g01189 565 Gene3D Tetratricopeptide repeat domain 384 536 IPR011990 GO:0005515
Pumo6g01189 565 SMART tpr_5 398 431 IPR019734 GO:0005515
Pumo6g01189 565 SMART tpr_5 442 475 IPR019734 GO:0005515
Pumo6g01189 565 SMART tpr_5 476 509 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01189 Pumo-Chr6 15666970 15669935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01189 15 565 Calmodulin-binding Proteins AT5G48570 73.036 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01189 K09571 - gmx:100810243 1025