Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01185 ATGCAGTCCCTCAAGTCACACCCTGCTCTTTTATTTTCTCTTTCCAATCACTTCTCTTCTTACTTTGTCAGATCCTTTCTCTCTTCATTCTCCACTGCTTCTTTCTCAACCCAATGCCAACACTCAAAGGAAAGCACTTCCATAATTGATTACCTAAATGCCAACTTCGAATTCTCGAAAACTCAATCCTTCTACATCTCAAAACGTGTTTCAAGGAGCAGATTCCCACAAAATCCCCTGTCTGTGCTCAGTTTTTTCAAACAAATAGGGTTTTCTGAAGCCCAGATTCTGTCTTTGATTCGTCAGAAACCCCAGATACTGTTCACTGATGTTGACAAAATCTTGAGACCCAAAATTGAGCTCTTTCAGCTGCTGGGTTTCCAAGGTTCGGAGTTGTGCAAGTTCATTTCCAAGAATTCCTCCATTTTGACTTTTAGTTTGAAGAAAACATTGGTCCCCTCTGTGGAAGCTATCAGGAAAATTGTCTGCAATGAGAAAGATTTGATTCATGTTTTGCACAGATATGGCAGGATACTCCCAAAGTACAAAAAAATTATGCACAATGTTGTCTTCTTGGAGAGTTGTGGCATTGTTGGGTCTCATCTTGCAATGCTACTCAAACTACAGCCAAGTCTTTTCATTGCACAGCAGTCTACTATAGGAAACTGTGTTTCGCGTGCACTAGACATGGGTTTCCATGAAAATTCAAGAATGCTTGTCCATGCAATCCATTCAATAAGTAGTTTGAGCTATAAAACATTTAGTAGAAAGCTGGAGGTAATTAATCGTTTTGGTTTTTCCCACGGTGAGGGTTTGCAAATGTTCAGAAGATCCCCAACTTTGCTTAGAACATCAGAGAATAAGTTGAAGGTGGGAATGGAATTCTTCTTGCATATAGTTATGCTGCCCAAGTCAGTACTGGTTCATCAGCCAAGGATTTTAATGTATAGCATGGAGGATCGCGTGCTTCCTCGATATAGAGTCTTCCAGCTCTTAATAGAAAAAAATCTTTGCAAGAAGGTCCCCAGTTATACTCATTTGTTATGCTTGTCTGAGGAGATGTTTTTGGACAAGTATATATCACAGTTCAGAGAAAATGCAGAGGAATTATTAGTAGCATACAAGGGTCATTATCTGGAAGCATAG 1146 0.3962 MQSLKSHPALLFSLSNHFSSYFVRSFLSSFSTASFSTQCQHSKESTSIIDYLNANFEFSKTQSFYISKRVSRSRFPQNPLSVLSFFKQIGFSEAQILSLIRQKPQILFTDVDKILRPKIELFQLLGFQGSELCKFISKNSSILTFSLKKTLVPSVEAIRKIVCNEKDLIHVLHRYGRILPKYKKIMHNVVFLESCGIVGSHLAMLLKLQPSLFIAQQSTIGNCVSRALDMGFHENSRMLVHAIHSISSLSYKTFSRKLEVINRFGFSHGEGLQMFRRSPTLLRTSENKLKVGMEFFLHIVMLPKSVLVHQPRILMYSMEDRVLPRYRVFQLLIEKNLCKKVPSYTHLLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01185 381 PANTHER CGI-12 PROTEIN-RELATED 43 362 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 Pfam mTERF 149 261 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 Pfam mTERF 248 355 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 Pfam mTERF 83 170 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 Gene3D Transcription termination factor 3, mitochondrial 160 367 IPR038538 -
Pumo6g01185 381 FunFam Mitochondrial transcription termination factor-like 147 367 - -
Pumo6g01185 381 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 304 336 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 169 198 IPR003690 GO:0003690|GO:0006355
Pumo6g01185 381 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01185 Pumo-Chr6 15619989 15621817 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo6g01185 mTERF 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01185 K15032 - cave:132191063 340.117