Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01174 ATGTCGAATTTCCTGAAATCCCTCACTCCACCGCCCTCGGGGTGGTCTAAAACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCATCAAGCCACGTGACCAGCGTAAGCCTCGCGTCACAGTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCACGCAACTCCGCACTCTCTCGCTCCAAGACAATTCCCTCACCGGCACCCTCCCTTCACTCTCCAACCTCTCGTTTCTCCAAACCGCCTACCTCAACCGCAACAACTTCACCTCCGTGGCCCCCACCGCCTTCGCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGCCTCCAACCCTAGCCTCCAACCCTGGACCTTCCCTACCGACCTCACCTCCTCCGCGAACCTAATCGACCTCGACCTCGCCACCGTAGGCCTCACCGGTCCCATACCGGACATCTTCGACAAATTCCCTTCGCTTCAACACCTTCGCCTCTCCTACAACAACCTCACCGGCAATTTACCTTCCTCCTTCGCCGCCTCCACCATCGCCACGCTCTGGCTCAACAACCAGGCCACCGGCTTGTCCGGTACCCTCGACGTCCTCTCCAACATGACCGAGTTGAACCAGGCCTGGCTCAACAAAAACCACTTCATCGGTTCCATTCCCGATTTGTCGCAATGCAAGGACTTATCCGACTTGGAGCTAAGGGATAACCAGTTAACCGGCGTGGTTCCCGCTTCCTTGACGAGTCTTCCGAGTTTGAAGAAAGTTTCGCTCGATAACAACGAGCTTCAGGGGCCTGTGCCGGTGTTCGGGAAAGGTGTGAATGTTACTCTCGATGGGCTCAATAGCTTTTGTCTCAGCACTCCTGGGGATTGTGATCCCAGGGTGATGGCTTTGCTCCAGATTGCTGAGGCGTTCGGGTATCCGGTTCGGTTGGCGGATTCGTGGAAGGGGAATGACCCTTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGGAAGATTATTACTGTGAATTTCGCGAAACAGGGTTTGCAGGGTACCATCTCACCTGCATTTGCCAATTTGACTGATATGAGGAGCTTGTTTCTCAATGGGAATAATTTGACCGGTTCTATACCTGAGAGTTTGACCACTTTGTCTCAGCTTCAGACTCTTGATGTGTCTGATAACAACCTCTCTGGATTGGTTCCTAAGTTCCCCGCAATGGTGAAGTTGGTGACTGCGGGTAATGCTTTGCTTGGGAAAGCTCCTAGTCCTGGAGGTGGACCAAGTGGAACTACTCCTTCAGGGTCTTCGCCTGGCGGAAGTGGCGGTGAATCCGCAAAGGGGAATTCTTTGGTGTCACCGGGTTGGATTGCTGGTATGGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTATGTCAAGAAGCGGCAGGGGAAGTTCAGTAGGGTTAATGGTCGTGAAAATGGGAAAGGAAGCTTTAAACTTGATGCTGTCAATGTTTCTAATGGATATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCATGCTTTTGATGGTGCAACGTTTTCGATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGCGAGGAAAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGAGTTGAATGATGGAACGAAAATTGCTGTCAAGAGGATGGAATCTGTTGCCATGGGAAACAAAGGACTGAAAGAGTTCGAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTGGGGTATTGCATCAATGGCAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGAACATGGGTATGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGCGATGACATGAGAGCAAAGGTTGCAGATTTTGGATTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAATCCGGATGAGGAAACCATGGAAAGCATATATAAGGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGTCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGCCACGAAGACGACGATGACGGCTCCGGGGGTGACCTTCAGATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAACGAAGGCACTTCCTCAATATTTAATGACATGTCCATCTCACAAACCCAATCAAGCATCCCCTCTAAACCTGCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAA 2679 0.4938 MSNFLKSLTPPPSGWSKTTPFCQWKGIQCDSSSHVTSVSLASQSLTGTLPSDLNSLTQLRTLSLQDNSLTGTLPSLSNLSFLQTAYLNRNNFTSVAPTAFASLTSLQTLSLASNPSLQPWTFPTDLTSSANLIDLDLATVGLTGPIPDIFDKFPSLQHLRLSYNNLTGNLPSSFAASTIATLWLNNQATGLSGTLDVLSNMTELNQAWLNKNHFIGSIPDLSQCKDLSDLELRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNVTLDGLNSFCLSTPGDCDPRVMALLQIAEAFGYPVRLADSWKGNDPCDGWNYVVCAAGKIITVNFAKQGLQGTISPAFANLTDMRSLFLNGNNLTGSIPESLTTLSQLQTLDVSDNNLSGLVPKFPAMVKLVTAGNALLGKAPSPGGGPSGTTPSGSSPGGSGGESAKGNSLVSPGWIAGMVVIVLFFIAVVLFVSWKCYVKKRQGKFSRVNGRENGKGSFKLDAVNVSNGYGGVPSELQSQSSGDRSDLHAFDGATFSIQVLRQVTNNFSEENILGRGGFGVVYKGELNDGTKIAVKRMESVAMGNKGLKEFEAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQEHGYAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEDDDDGSGGDLQMSLPQALRRWQANEGTSSIFNDMSISQTQSSIPSKPAGFADSFDSMDCR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01174 892 SMART LRR_typ_2 79 102 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 56 78 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 378 401 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 103 124 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 248 271 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 153 176 IPR003591 -
Pumo6g01174 892 SMART LRR_typ_2 354 377 IPR003591 -
Pumo6g01174 892 Gene3D Transferase(Phosphotransferase) domain 1 621 840 - -
Pumo6g01174 892 Pfam Protein tyrosine and serine/threonine kinase 546 816 IPR001245 GO:0004672|GO:0006468
Pumo6g01174 892 FunFam Receptor-like kinase TMK4 1 288 - -
Pumo6g01174 892 PANTHER OSJNBA0070M12.3 PROTEIN 1 892 - -
Pumo6g01174 892 MobiDBLite consensus disorder prediction 870 892 - -
Pumo6g01174 892 Gene3D Ribonuclease Inhibitor 2 286 IPR032675 -
Pumo6g01174 892 Gene3D Ribonuclease Inhibitor 292 415 IPR032675 -
Pumo6g01174 892 ProSiteProfiles Leucine-rich repeat profile. 58 80 IPR001611 GO:0005515
Pumo6g01174 892 SUPERFAMILY Protein kinase-like (PK-like) 526 819 IPR011009 -
Pumo6g01174 892 Pfam Leucine Rich Repeat 155 174 IPR001611 GO:0005515
Pumo6g01174 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Pumo6g01174 892 SUPERFAMILY L domain-like 7 405 - -
Pumo6g01174 892 ProSiteProfiles Protein kinase domain profile. 543 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01174 892 Pfam Leucine rich repeat N-terminal domain 4 30 IPR013210 -
Pumo6g01174 892 Pfam Leucine rich repeat N-terminal domain 296 328 IPR013210 -
Pumo6g01174 892 SMART serkin_6 543 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01174 892 FunFam receptor protein kinase TMK1 507 620 - -
Pumo6g01174 892 MobiDBLite consensus disorder prediction 421 440 - -
Pumo6g01174 892 CDD STKc_IRAK 549 822 - -
Pumo6g01174 892 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Pumo6g01174 892 FunFam receptor protein kinase TMK1 621 838 - -
Pumo6g01174 892 FunFam Leucine-rich repeat receptor-like kinase 292 415 - -
Pumo6g01174 892 Gene3D Phosphorylase Kinase; domain 1 509 620 - -
Pumo6g01174 892 MobiDBLite consensus disorder prediction 415 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01174 Pumo-Chr6 15475267 15479101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01174 35 819 Receptor kinase-like Gene Family AT5G07280 33.990 3.71e-96 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo6g01174 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01174 - - gmx:100286794 1576.99