Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01170 ATGGCAGCGGGCAAAATTGTTCTATGCTTTTCAGTATCAGATCAACAGGACATTGTTTCTGCATCACTTACAGTCAAGGAAGCTGGAGGAGTTGGAGTAGTATATGCACAATATCATGAAGATGGACTTGATCAATGTGGTTCCTTTCCATGTATCAAGGTAGATTATGAAGTGGGGACACAAATATTAACCTATATTAGAAGATCAAGGTTTCCAACAGTAAGCTTAAGTTTTCCAAAGACCGTTATTGGAAAATGGGCATCACCACGAGTTGCATCTTTCTCATCTAGAGGACCCAGTAGCATGTCTCCAACAGTGCTAAAGCCTGACATAGCTGCACCAGGTGTGGACATTTTGGCCGCTTTTCCACCAAAAGGCACTACAAGGAGTAGTGGATTTGCATTCTTATCTGGAACTTCAATGTCATGTCCCCATGTGGCAGGAATAGCAGCTCTCATCAAATCCAAACACCCAACTTGGTCACCTGCAGCCATAAGATCAGCTTTGGTAACAACAGCATCTCAAAGTGGAACTGATGGAAGCGTTATATCTGAAGAGGGTTCTACACATAAGACAGCAGACCCTTTTGATATTGGAGGTGGACACGTGGACCCCAACAAAGCAATGGATCCAGGACTCCTATATGATATCACCACTGAAGATTACATCCAATTCCTATGTTCCATGGGTCACAGTAGTGCATCCATTAGCAAAGTGACCAAGACCACCACAAGTTGTAAGAAAGGAAAACACCATGCACTGAACCTCAACCTTCCTTCCATATCAGTTCCAAACCTGAAGAGGGCTGCAACAGTAATGAGAACAGTGACAAACGTGGGAAACATAACTGCGGTCTACAAAGCTCTAGTGAAGGTTCCATATGGCATAAAAGTGACAGTTGAACCTCAAACTTTGAGTTTCAATTCAGAAACTCGAGTCCTTACCTTCAATGTCAGTTTCCTGTCAACTCAAAAGTTTCATGGAGATTACAAATTTGGGAGCCTAACATGGACAGATGGCAAGTATTTTGTGAGGAGCCCAATTGCTGTGAGGACCATACAGTTTGAATGA 1071 0.4286 MAAGKIVLCFSVSDQQDIVSASLTVKEAGGVGVVYAQYHEDGLDQCGSFPCIKVDYEVGTQILTYIRRSRFPTVSLSFPKTVIGKWASPRVASFSSRGPSSMSPTVLKPDIAAPGVDILAAFPPKGTTRSSGFAFLSGTSMSCPHVAGIAALIKSKHPTWSPAAIRSALVTTASQSGTDGSVISEEGSTHKTADPFDIGGGHVDPNKAMDPGLLYDITTEDYIQFLCSMGHSSASISKVTKTTTSCKKGKHHALNLNLPSISVPNLKRAATVMRTVTNVGNITAVYKALVKVPYGIKVTVEPQTLSFNSETRVLTFNVSFLSTQKFHGDYKFGSLTWTDGKYFVRSPIAVRTIQFE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01170 356 Pfam Subtilase family 87 177 IPR000209 GO:0006508|GO:0008236
Pumo6g01170 356 CDD PA_subtilisin_like 2 76 - -
Pumo6g01170 356 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 350 IPR045051 -
Pumo6g01170 356 Pfam Fibronectin type-III domain 255 350 IPR041469 -
Pumo6g01170 356 MobiDBLite consensus disorder prediction 176 202 - -
Pumo6g01170 356 SUPERFAMILY Subtilisin-like 81 213 IPR036852 GO:0004252|GO:0006508
Pumo6g01170 356 Gene3D - 2 83 - -
Pumo6g01170 356 Gene3D Peptidase S8/S53 domain 84 222 IPR036852 GO:0004252|GO:0006508
Pumo6g01170 356 FunFam Subtilisin-like protease SBT1.5 226 353 - -
Pumo6g01170 356 Gene3D - 226 353 - -
Pumo6g01170 356 ProSiteProfiles Serine proteases, subtilase domain profile. 1 209 - -
Pumo6g01170 356 ProSitePatterns Serine proteases, subtilase family, serine active site. 138 148 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01170 Pumo-Chr6 15463648 15465180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01170 3 352 Subtilisin-like Serine Gene Family AT4G10540 50.852 3.63e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01170 - - gmx:100792709 662.144