Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01161 ATGGACGGAGCGGCACAATCTGCCGGAGCCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGGACGATGTCTCCACCAACGACATCGTTTCGTGGAGCTCCACCAACAACAGCTTCGTTGTGTGGAACCCTCCCGAGTTCGCTCGCCTTCTTCTCCCAACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGATTTCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTGTGAAAGATCAAAAGCATCTTCTTAAGAACATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCTGTTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATAGACAAACTTTCCCATGAGAAAACTTCTCTTGAATCCAATATTTATAACTTCAAACAACATCAGTCAACAGCAAAGGGTAAGCTAGAAGATTTTCTGCAGCGATTAGATGGTATTGAGAAGAGGCAGAGACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTCGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTAACTGCATATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAACCAGTTGCCGAAAGTAGCTTTGGGGACAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCGAATAAACTCAGACTGGAGTTGTCACCAGCTGTTTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACAGAAAAAGCTGTCTGAAGTAGAACCAAAAGGAGTGCAGACAATAACAGCTCTTACATTTGCACCTGAAACATTAGAGCTTGCTGATACTGGGGCTTCTTTTACTTTTAAGATGGATTCGTGTTTACCGCAAAGAGCAACAACTGCTGAGAGCTCAAAACTGATATCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCTATCCTGCCAACTAAATTTAACTCTGGCATCTTGTCCATTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGCAAATTGGCAGAATCAAGATTTTTTGCCAATGGTAAAGAATCTGATGGTGGTGTTTCCTCAAACCGAAATGTAGCTGCTGAGGCTACCAATTTAGCTTCATCACAGGAGGCTCCAAGTAACAACCAAGTTAACCCAGCTCCTCCAGACAGGGTGAATGATGTTTTCTGGGAACAATTTCTTACTGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCAAACCCATATGATGAACAAGACGAAGGGCGGTCAGCTCGTGGAATCTCTAGAAACATTAAGAACATTGATCAACTCACCCTTTGA 1443 0.4331 MDGAAQSAGAGGPAPFLLKTYDMVDDVSTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIDKLSHEKTSLESNIYNFKQHQSTAKGKLEDFLQRLDGIEKRQRQLLNFFEKALQNPTFVEHLSRKIESMDLTAYNKKRRLPQVDHVQPVAESSFGDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTITALTFAPETLELADTGASFTFKMDSCLPQRATTAESSKLISLEPSSEEGDSLSCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESRFFANGKESDGGVSSNRNVAAEATNLASSQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSARGISRNIKNIDQLTL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01161 480 Gene3D - 11 106 IPR036388 -
Pumo6g01161 480 Coils Coil 123 143 - -
Pumo6g01161 480 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 274 IPR027725 -
Pumo6g01161 480 MobiDBLite consensus disorder prediction 261 283 - -
Pumo6g01161 480 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Pumo6g01161 480 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01161 480 FunFam Heat shock transcription factor 1 9 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01161 Pumo-Chr6 15369248 15374123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01161 16 480 HSF AT4G13980 55.391 1.84e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo6g01161 HSF_DNA-bind 6.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01161 K09419 - gmx:100816484 907.516