Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01150 ATGCGGTGTTATGGATTAACCATACCGGGAAGCGACCATCGCTTCTGCGTGCCCACCGTATCTCCGGTGTTCCTGCGGCCCAACAGGCCCATTAGCCGAATCGCGTTTCCGAAGGCGACACTGAAGAAGGAGGGGTTCGTGGTGGAGCTGAGCTTCTACGAGCTTCTGGGGATACCCGAATCGGGCTCGTTAACGGAGATAAAGAACGCCTACAAGCAACTGGCCCGAAAGTACCACCCGGACGTGTCTCCACCGGGTCGGGTCGAGGAGTACACCAAGAGGTTTATTCAGGTGCAGGAGGCCTACGAGACCTTATCCGATCCTTCCAGAAGAGCTATGTACGATACGGACATGGCCAAGGGCATTAACTTCGCCTTCAACGCTCGTAGACGCAGCTATAATTACCACGATCAGGTGGTTGAACAAAAAAGTGAATGGAAATCTAGGTGGCAATCTCAACTGTCAGAGCTGAAGAGAAGAAGTAACAGCAAGGATGCTGGGGGGAATATGTCATGGGCAGCACGAATGCGCCAGCAGAGGGATGAATTGTCAAATGAATCATGA 564 0.5266 MRCYGLTIPGSDHRFCVPTVSPVFLRPNRPISRIAFPKATLKKEGFVVELSFYELLGIPESGSLTEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDTDMAKGINFAFNARRRSYNYHDQVVEQKSEWKSRWQSQLSELKRRSNSKDAGGNMSWAARMRQQRDELSNES 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01150 187 CDD DnaJ 52 107 IPR001623 -
Pumo6g01150 187 Gene3D DnaJ domain 38 156 IPR036869 -
Pumo6g01150 187 ProSiteProfiles dnaJ domain profile. 51 118 IPR001623 -
Pumo6g01150 187 PRINTS DnaJ domain signature 71 86 IPR001623 -
Pumo6g01150 187 PRINTS DnaJ domain signature 90 110 IPR001623 -
Pumo6g01150 187 PRINTS DnaJ domain signature 53 71 IPR001623 -
Pumo6g01150 187 SUPERFAMILY Chaperone J-domain 50 121 IPR036869 -
Pumo6g01150 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 183 - -
Pumo6g01150 187 ProSitePatterns Nt-dnaJ domain signature. 95 114 IPR018253 -
Pumo6g01150 187 SMART dnaj_3 50 110 IPR001623 -
Pumo6g01150 187 Pfam DnaJ domain 52 115 IPR001623 -
Pumo6g01150 187 MobiDBLite consensus disorder prediction 155 187 - -
Pumo6g01150 187 FunFam Chaperone protein dnaJ 20, chloroplastic 39 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01150 Pumo-Chr6 15152181 15155202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01150 53 116 C2H2 Transcription Factor Family AT1G74250 44.776 3.48e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01150 - - gmx:100101903 352.829